Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02016 ATGGTGGTGATAGAGCAACAGGAGTGTGATGATCGAAACGAGAACCCCTCTAACGCCGGTGCGGGGAACGACGTTTCCGATGGCTTCGAAACCGCCAGCGACGCCGATCTCGGTAGCGACGCCGAAGCCGACGGAAACGACAGTGGAGCTATCAGTCAGGAAGGACCGCAGCATAGTGGGCAGCAACAGCAACAGAAGAAACCGACAGAACAAGAGCAAGAACAGGAGCTTGGTGATCCTCAGAGAAGCATTTCCTCCGACAACGCCTCTATCAATGAGGAAGAGTTGAGACAGAAAGCATTGGTTCAAGCAAATGAAGCAAAGGTAGAAGGTAACAAACTTTTTGTAGATGGGAAGTATGAGGAAGCATTATCACAATATGAACTTGCTTTACAAGTTGCACCAGACATGCCTTCATCTGTGGAAATACGCTCAATATGCCATGCTAACCGAGCTGTGTGCTTTCTTAAACTGGGAAAGTATGAAAACACAATTAAAGAATGCACAAAAGCATTAGAACTGAATCCTATGTATGTCAAAGCTTTGGTAAGAAGAGGAGAGGCCCATGAAAAGCTTGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAAACCATTCGTCGACTAGAGCCCCTTGCTGCAGAAAAACGGGAAAAGATGAAGGAAGAAATGATAGTCAAACTGAAAGAAATGGGCAACTCTGTCCTGGGCCGCTTTGGGATGAGCGTAGACAACTTTAAAGCAGTCAAAGATCCCAACACTGGTTCCTACTCTATCTCATTCCAACGCTAA 831 0.4549 MVVIEQQECDDRNENPSNAGAGNDVSDGFETASDADLGSDAEADGNDSGAISQEGPQHSGQQQQQKKPTEQEQEQELGDPQRSISSDNASINEEELRQKALVQANEAKVEGNKLFVDGKYEEALSQYELALQVAPDMPSSVEIRSICHANRAVCFLKLGKYENTIKECTKALELNPMYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKTIRRLEPLAAEKREKMKEEMIVKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR. 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02016 276 MobiDBLite consensus disorder prediction 50 68 - -
Seca1g02016 276 Gene3D Tetratricopeptide repeat domain 38 242 IPR011990 GO:0005515
Seca1g02016 276 ProSiteProfiles TPR repeat profile. 179 212 IPR019734 GO:0005515
Seca1g02016 276 MobiDBLite consensus disorder prediction 1 86 - -
Seca1g02016 276 ProSiteProfiles TPR repeat profile. 104 137 IPR019734 GO:0005515
Seca1g02016 276 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 4 276 - -
Seca1g02016 276 SUPERFAMILY TPR-like 104 222 IPR011990 GO:0005515
Seca1g02016 276 SMART tpr_5 104 137 IPR019734 GO:0005515
Seca1g02016 276 SMART tpr_5 145 178 IPR019734 GO:0005515
Seca1g02016 276 SMART tpr_5 179 212 IPR019734 GO:0005515
Seca1g02016 276 Pfam Tetratricopeptide repeat 147 177 IPR001440 GO:0005515
Seca1g02016 276 Pfam Tetratricopeptide repeat 180 212 IPR013105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02016 Seca-Chr1 41349329 41362857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02016 104 235 Calmodulin-binding Proteins AT3G25230 40.000 1.02e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02016 K24926 - gmx:100808386 388.267