Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02011 ATGGTCATCACTCTAAAGCAAGAACTCATCATGAACAGTTTCAAGACCATTGATGGTCGTGGCGTTAACGTTCACATTGCCTATGGGGCATGCATTACGATCCAGTTCATTACCAATGTCATCATCCATGGTGTCCATATCCATGATTGCAAGGGTCTTATCCAAAGAATGCCAAGGTGCAGACATGGGTATTTCCACGTTGTAAACAATGATTATACCCACTGGGAAATGTATGCAATTGGTGGCAGCGCCAATCCAACAATTAACAGCCAAGGCAACAGATACCTTGCCCCTGTGAACCCTTTTGCCAAGGAGGTAACCAAGAGAGTGGATACAGGAGAACCCGTGTGGAGAAGTTGGAATTGGAGGTCTCAGGGAGACCTTTTGCTCAATGGAGCTTTTTTCACTTCATCAGGAGCAGGAGCTGCAGCAAGCTATGCTAGAGCCTCAAGTTTGGGGGCCAAATCATCATCATTAGTTGGTACCATTACCTCTGGTGCAGGTGTTCTTAACTGTCGCAGGGGTGTCATGTGTTAA 537 0.4618 MVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFITNVIIHGVHIHDCKGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPVNPFAKEVTKRVDTGEPVWRSWNWRSQGDLLLNGAFFTSSGAGAAASYARASSLGAKSSSLVGTITSGAGVLNCRRGVMC. 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02011 178 PANTHER PECTATE LYASE 18-RELATED 1 51 IPR045032 GO:0030570
Seca1g02011 178 SMART amb_all 1 101 IPR002022 -
Seca1g02011 178 Gene3D - 53 171 IPR012334 -
Seca1g02011 178 Gene3D - 1 52 IPR012334 -
Seca1g02011 178 SUPERFAMILY Pectin lyase-like 1 178 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02011 Seca-Chr1 41171286 41172912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02011 1 65 Polysaccharide Lyase AT4G13710 75.385 9.10e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02011 K01728 - gmx:100809277 231.876