Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02008 ATGTCTGGCCAGAGAAGCTCAAGAGCTTCAAAGTTCACAGAGAATGAGATTAGTGATCTTGTGTCAAGGTTACAACTGCTTCTGCCACAGCTTAACCAAAGAAGCAACTCAAGGCAATCAGCGTCGAAGATCTTGCAAGAAACTTGCAGCCACATAAGGAGGCTTCAGAAAGAGGTAGAAGACCTAAGTGTGAAGCTAACTGAGCTGATGGATTCTGTGGATATGAGTGATATTGACAGAAGAACTTTAGAAAACTTTTTGCAACAATAA 270 0.4148 MSGQRSSRASKFTENEISDLVSRLQLLLPQLNQRSNSRQSASKILQETCSHIRRLQKEVEDLSVKLTELMDSVDMSDIDRRTLENFLQQ. 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02008 89 Gene3D - 11 85 IPR036638 GO:0046983
Seca1g02008 89 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 55 IPR011598 GO:0046983
Seca1g02008 89 Coils Coil 45 72 - -
Seca1g02008 89 PANTHER DNA BINDING PROTEIN 1 89 IPR044172 -
Seca1g02008 89 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 72 IPR036638 GO:0046983
Seca1g02008 89 Pfam Helix-loop-helix DNA-binding domain 16 56 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02008 Seca-Chr1 41137003 41138958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02008 5 74 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 52.113 9.58e-18 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca1g02008 HLH 0.00023 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02008 - - cam:101497180 122.864