Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01998 ATGGCGTTTCTGAAGCTTTTCTCTCTCTACATTTCCATGTTCTTCTTCTTCTTCTTTTGCTTCTGCACAGCCAGTACACCCACAAAGTCTTTGTCTCCATCTACTTCCTCTGATGTTGAGCTTCTCTTGGGAAAAATCAGGGCTTCATTGCAAGGTAACAGTGACAACCTTGTTTTGTCTTCATGGAACTCTTCTATACCACTTTGCCAATGGAGAGGCCTCAAGTGGGTCTTCTCCAATGGCTCTTCTCTGTCATGCAGTGACTTGTCTTCACCACTTTGGACCAGTCTTTCACTTTACAAGGACCCTTCTGTGCATTTGCTCTCTCTTCAGCTTCCATCTGCTAACCTCTCTGGTTCACTCCCTAGAGAGCTTGGGGAGTTCCCTATGCTTCAGAGTCTCTATCTTAACATCAATTCATTGAAAGGAGCCATCCCTCTTGAGCTTGGCTTTAGCTCCTCTCTCTCTGACATTGATTTAGGTGATAATATGCTGAGTGGGGCTCTTCCACCATCCATTTGGAACTTGTGTGAGAGGCTTGTTTCCCTTAGACTCCATGGTAATTTACTCTCTGGGTCTGTTTCTGAACCAGCATTGCCTAACTCCTCTTGCAAGAATTTGCAATTTCTTGATTTGGGTAACAATAGGTTTTCTGGGAATTTCCCTGAGTTCATCACAACGTTTGGTGGGCTAACACAGCTTGATTTAGGGAGTAACATGTTTACAGGTACAATTCCTCAAAGCTTAGTTGGGCTAAAGCTTGAAAAATTGAATCTTTCCCACAATAATTTTAGTGGGGTTTTGCCATTCTTTGGAGAATCCAAATTTGGTGTGGATGCTTTTGAAGGGAATAACCCTGGCTTGTGTGGGCCACCTTTGACAAGTTGTACTAGGGCATCTACACTTAGTTCTGGTGCAGTTGCTGGTATTGTTATCAGTCTGATGACAGGTGCTGTGGTTTTGGCTTCTTTGCTTATTGGCTATATGCAAAACAAGAAGAGGAAGGGCAGTGGAGAGAGTGAAGATGAACTGAATGATGAAGAAGAAGATGAAGAAAATGGTGGTAGTGCTGTTGGTGGAGCTGGTGAGGGAAAGCTTATGTTATTCCCTGGAGGTGAGAATTTGACATTAGATGATGTATTGAATGCAACTGGGCAAGTTATGGAGAAGACATGTTATGGGACAGCTTATAAGGCAAAACTTGCTGATGGAGGCACCATTGCTTTGAGGTTATTGAGAGAAGGAAGCTGCAAGGACAAGACTTCATGCTTGTCAGTTATAAAGCAATTGGGAAAAATTCGCCATGAGAATTTGATTCCTTTGAGAGCTTTCTATCAGGGCAAGAGAGGGGAGAAGCTCCTTATTTATGATTATCTGCCTCTCAGAACCCTTCATGATCTTTTACATGAAAGTAAAGCAGGAAAACCAGTGCTGAACTGGGCTAGGCGACACAAGATTGCATTGGGTATAGCAAGAGGGCTAGCTTATCTTCATACAGGACTTGATGTTCCTATCACTCATGCAAATGTAAGATCCAAGAATGTGCTTGTGGATGACTTCTTTGTAGCAAGGCTCACTGATTTTGGCCTTGATAAGCTGATGATTCCTTCCATCGCCGACGAAATGGTGGCGCTTGCCAAGACCGATGGCTACAAGGCTCCTGAGCTTCAAAAAATGAAGAAATGTAACTCCAGGACTGATGTCTTTGCATTTGGTATATTACTACTTGAAATCTTGATTGGCAAGAAACCTGGGAAGAATGGAAGGAATGGTGAGTTTGTGGATTTGCCTTCAATGGTGAAGGTAGCAGTTTTGGAGGAGACTACAATGGAAGTGTTTGATGTGGAACTCTTGAAAGGGATAAGAAGTCCAATGGAAGATGGGTTGGTCCAAGCACTGAAGCTGGCAATGGGATGCTGTGCACCAGTGGCATCTGTTAGACCAACCATGGATGAAGTTGTGAGGCAGTTGGAGGAGAATAGACCAAGGAACAGGTCTGCTTTATACAGTCCTACAGAAACAAGGAGTGGAAGTATTACCCCATTTTGA 2049 0.4344 MAFLKLFSLYISMFFFFFFCFCTASTPTKSLSPSTSSDVELLLGKIRASLQGNSDNLVLSSWNSSIPLCQWRGLKWVFSNGSSLSCSDLSSPLWTSLSLYKDPSVHLLSLQLPSANLSGSLPRELGEFPMLQSLYLNINSLKGAIPLELGFSSSLSDIDLGDNMLSGALPPSIWNLCERLVSLRLHGNLLSGSVSEPALPNSSCKNLQFLDLGNNRFSGNFPEFITTFGGLTQLDLGSNMFTGTIPQSLVGLKLEKLNLSHNNFSGVLPFFGESKFGVDAFEGNNPGLCGPPLTSCTRASTLSSGAVAGIVISLMTGAVVLASLLIGYMQNKKRKGSGESEDELNDEEEDEENGGSAVGGAGEGKLMLFPGGENLTLDDVLNATGQVMEKTCYGTAYKAKLADGGTIALRLLREGSCKDKTSCLSVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPLRTLHDLLHESKAGKPVLNWARRHKIALGIARGLAYLHTGLDVPITHANVRSKNVLVDDFFVARLTDFGLDKLMIPSIADEMVALAKTDGYKAPELQKMKKCNSRTDVFAFGILLLEILIGKKPGKNGRNGEFVDLPSMVKVAVLEETTMEVFDVELLKGIRSPMEDGLVQALKLAMGCCAPVASVRPTMDEVVRQLEENRPRNRSALYSPTETRSGSITPF. 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01998 682 Gene3D Phosphorylase Kinase; domain 1 371 458 - -
Seca1g01998 682 Pfam Protein tyrosine and serine/threonine kinase 386 657 IPR001245 GO:0004672|GO:0006468
Seca1g01998 682 MobiDBLite consensus disorder prediction 662 682 - -
Seca1g01998 682 Gene3D Ribonuclease Inhibitor 200 298 IPR032675 -
Seca1g01998 682 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 661 IPR046959 -
Seca1g01998 682 Gene3D Ribonuclease Inhibitor 37 199 IPR032675 -
Seca1g01998 682 ProSiteProfiles Protein kinase domain profile. 382 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01998 682 MobiDBLite consensus disorder prediction 663 682 - -
Seca1g01998 682 Gene3D Transferase(Phosphotransferase) domain 1 460 674 - -
Seca1g01998 682 MobiDBLite consensus disorder prediction 334 361 - -
Seca1g01998 682 Pfam Leucine rich repeat 206 264 IPR001611 GO:0005515
Seca1g01998 682 FunFam Leucine-rich repeat receptor-like protein kinase 204 296 - -
Seca1g01998 682 SUPERFAMILY L domain-like 71 270 - -
Seca1g01998 682 SUPERFAMILY Protein kinase-like (PK-like) 391 658 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01998 Seca-Chr1 40963492 40966827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01998 13 682 Receptor kinase-like Gene Family AT3G24660 73.770 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca1g01998 PK_Tyr_Ser-Thr 6.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01998 - - gmx:100814814 1142.87