Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g01996 | ATGGCTGAGTTTTTTAGGCACTTGCTAGTGTCAATGCCGAGGCATTCCTTGAGCAACCACAACCACCACCAAATGCCGAGGCAAGCTTTCATCACAAACCATCACCACCACCATCACCATCACCTTCACCATCTTCATTGTGTTCTCCATGTTTTCTTCTTTACACTTCTTGTCCCTCTTTCCTTTGCTGCTAATGATGAAGTTAGTGTCTTAGTTTCATGGATGCATAGCTCTTCCAAAGTTCCTTCTGCTTTTTCTAACTGGAACCCTTTGGACTCTAGTCCTTGCAATTGGTCTTACATCAAATGCTCTTCAGAAAGCCTTGTCACTGAGATAACCATTCAAACAGTTGAGTTAGCCCTTCCTTTTCCTTCCAATATCTCTTCCCTTCCCTTCCTTCAAAAGCTGGTCATTTCTGGGGCTAACCTTACTGGGGCTATCTCACCTGATATAGGGAATTGCCCTGAGCTTACAGTTATTGATCTTAGCTCAAATAGTCTTGTGGGTGACATTCCTTCAAGTATTGGTAAGCTCAAAAATCTCCAAGATTTGAGCTTGAACTCTAACCAGCTCACTGGGCCAATCCCAAAGGAGCTTGGTGATTGTTTTAATCTTAAGAATCTTGACATTTTTGACAACAACCTTAATGGGGATCTTCCTGCTGAGCTGGGAAAGCTTTCAAATTTGGAAGTTATAAGAGCAGGAGGAAACAAGGACATTGTGGGGAAGATTCCAGATGAGCTTGGAGAATGCAGGAATTTGACAGTGTTAGGTCTTGCTGACACTAAAATTTCTGGTTCAATGCCTGCTTCATTGGGTAAGCTAAGTATGCTTCAGACAATATCTATTTATAGTACATTGCTCTCTGGTGAGATTCCTCCTGAAATAGGCAACTGTTCAGAGCTTGTGAACTTGTTTTTGTATGAGAATGATCTCACTGGTTCCCTGCCAAAGGAGCTAGGTAAGCTTCAGAAGCTGGAAAGAATGCTGCTGTGGCAAAATAGTCTTGTTGGAAGCTTACCTGAGGAAATTGGTAACTGCAGAAGCTTGAAGATTCTTGATGTCTCCTTAAATTTATTATCTGGTGGAATACCTCAAAGTTTGGGGCAACTCTCAAATCTTGAAGAGCTTATGCTAAGCAACAATAACATCTCTGGTTCAATACCACCTGCTCTTTCCAATCTCACAAACCTCATACAGTTGCAGTTAGATACAAATCAGCTATCAGGTTCTATTCCACCTGAGCTTGGAAGGTTGACAAAGCTAACAGTCTTTTTTGCTTGGCAGAACAAGCTTGAAGGTGGCATTCCATCAGCATTGGGAGATTGTAGAAGCCTTGAGGCTTTGGATTTGTCATACAATGCACTCACTGATAGCTTACCCCCAGGCCTATTTAAGCTTCAAAACTTGACAAAGCTTTTACTAATCTCTAATGATATTTCAGGCCCCATTCCCCATGAGATTGGTAACTGCAGTTCTCTCATTAGGCTCAGGCTTGTAGACAACAGAATCAATGGGGAGATACCAAAAGAAATTGGCTTCCTCAACAACCTCAGTTTCCTTGATCTGTCTGAAAATCATCTTACTGGGTCAGTACCACAAGAGATTGGAAACTGTAAAGAGCTGCAAATGCTGAATCTAAGCAATAACTCCCTTTCTGATGCTTTGCCTAGTCATTTGTCTTCCCTCACAAGGCTAGAGGTTTTGGATGTTTCTCTAAATAACTTTTCTGGTGAGGTTCCAATGAGTATTGGTCAACTCACTTCACTTCTTAGAGTCATTCTAAGCAAAAACTCTTTCTCTGGATCAATTCCCTCTTCACTTGGGCAATGTTCAGGTCTTCAACTGCTAGACCTTAGCAGCAACATGTTCTCAGGGAGCATCCCATCAGAACTGTTTCAAATTGAAGCACTTGATATTGCTTTAAATTTGAGTCATAATGCATTATCTGGTGTAATCCCACCAGAGATTTCATCTTTGAACAAGCTTTCTGTTCTAGACCTTTCACACAACATGCTTGAAGGTGACTTGATGGTGTTTTCAGGGCTTGAAAATCTTGTTTCTCTGAATATTTCCTACAACAAATTCACTGGCTATCTTCCAGACAGAAAGTTATTCCACCAACTATCAGCTACAGACTTTGCTGGAAATCAAGGTTTGTGTCCTAATGGTCATGATTCATGTTTTGTTAGCAATGATGCAATGGAAAAAATGCTGAATGGTACTAATTCTAAGAGGTCAAAGATAATCAAACTGGCTATTGGATTGCTCAGTGCCTTGACTGTGGCAATGGCAATCTTTGGAGTTGTTACAGTGTTGAGAGCAAGGAAAATGATTAGAGATGACAATGATTCTGAGATGGGAGGAGATTCATGGCCTTGGCAGTTCACCCCATTCCAAAAGGTGAATTTCTCTGTGGAGCAAGTTTTGAAATGCTTGGTGGAATCCAATGTAATTGGAAAAGGGTGTTCAGGGATTGTGTATCGTGCAGATATGGAAAATGGTGATGTTATTGCTGTGAAAAGACTATGGCCAACAACAATGGCTGCTAGATATGATACTCAAAGTGACAAGTTAGCAGTTAATGGAGGAGTTCGTGATTCCTTTTCAGCTGAGGTAAAAACTCTTGGTTCAATTCGCCACAAGAACATTGTAAGGTTCTTGGGTTGCTGTTGGAACAGAAACACAAGGCTACTTATGTATGATTACATGCCAAATGGGAGCCTAGGAAGTCTTCTTCATGAAAGAAGTGGAAATTGCTTGGAATGGGACATCAGATTTCGGATAATACTAGGAGCAGCTCAAGGTTTGGCTTATTTACACCATGATTGTGCTCCTCCCATTGTTCATAGGGACATTAAGGCCAACAACATCCTCATAGGCCCTGAATTTGAACCATACATAGCTGATTTTGGCCTTGCAAAACTTGTTGATGATGGAGATTTTGCAAGATCTTCTAGTACACTAGCTGGTTCCTATGGTTACATAGCTCCTGAGTATGGCTATATGATGAAGATAACAGAGAAAAGTGATGTTTACAGCTATGGTATTGTTGTAATGGAAGTGCTAACAGGGAAGCAACCAATTGATCCAACAATACCTGATGGACTTCATATTGTTGATTGGGTGAAACAGAAAAGAGGGGGAGTTCAAGTGCTAGATGAAAGCTTAAGAGCTAGGCCAGAATCTGAAATTGAGGAGATATTGCAGACCTTAGGTGTGGCTTTGCTGTGTGTAAACTCAAGTCCAGATGATAGACCAACCATGAAAGATGTGGTAGCAATGATGAAGGAAATTAGGCAGGAGAGAGAGGAATGTGTGAAAGTTGACATGCTTCTTGATGGATCTTCAGCAAATGATCAACAAGAAAGTAATCATTCCAATGAAGAACCAATGGCAATGATGAAACATGCATGCCCAACAAGCAGCAGCAGTAGCAGCAACACAAATCTGCATCTAAATTACTCTCCTCATTGTAGTCCAACACTAAAGTAA | 3495 | 0.41 | MAEFFRHLLVSMPRHSLSNHNHHQMPRQAFITNHHHHHHHHLHHLHCVLHVFFFTLLVPLSFAANDEVSVLVSWMHSSSKVPSAFSNWNPLDSSPCNWSYIKCSSESLVTEITIQTVELALPFPSNISSLPFLQKLVISGANLTGAISPDIGNCPELTVIDLSSNSLVGDIPSSIGKLKNLQDLSLNSNQLTGPIPKELGDCFNLKNLDIFDNNLNGDLPAELGKLSNLEVIRAGGNKDIVGKIPDELGECRNLTVLGLADTKISGSMPASLGKLSMLQTISIYSTLLSGEIPPEIGNCSELVNLFLYENDLTGSLPKELGKLQKLERMLLWQNSLVGSLPEEIGNCRSLKILDVSLNLLSGGIPQSLGQLSNLEELMLSNNNISGSIPPALSNLTNLIQLQLDTNQLSGSIPPELGRLTKLTVFFAWQNKLEGGIPSALGDCRSLEALDLSYNALTDSLPPGLFKLQNLTKLLLISNDISGPIPHEIGNCSSLIRLRLVDNRINGEIPKEIGFLNNLSFLDLSENHLTGSVPQEIGNCKELQMLNLSNNSLSDALPSHLSSLTRLEVLDVSLNNFSGEVPMSIGQLTSLLRVILSKNSFSGSIPSSLGQCSGLQLLDLSSNMFSGSIPSELFQIEALDIALNLSHNALSGVIPPEISSLNKLSVLDLSHNMLEGDLMVFSGLENLVSLNISYNKFTGYLPDRKLFHQLSATDFAGNQGLCPNGHDSCFVSNDAMEKMLNGTNSKRSKIIKLAIGLLSALTVAMAIFGVVTVLRARKMIRDDNDSEMGGDSWPWQFTPFQKVNFSVEQVLKCLVESNVIGKGCSGIVYRADMENGDVIAVKRLWPTTMAARYDTQSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERSGNCLEWDIRFRIILGAAQGLAYLHHDCAPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVMEVLTGKQPIDPTIPDGLHIVDWVKQKRGGVQVLDESLRARPESEIEEILQTLGVALLCVNSSPDDRPTMKDVVAMMKEIRQEREECVKVDMLLDGSSANDQQESNHSNEEPMAMMKHACPTSSSSSSNTNLHLNYSPHCSPTLK. | 1165 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g01996 | 1164 | ProSiteProfiles | Leucine-rich repeat profile. | 373 | 396 | IPR001611 | GO:0005515 | |
Seca1g01996 | 1164 | SMART | LRR_sd22_2 | 178 | 199 | - | - | |
Seca1g01996 | 1164 | SMART | LRR_sd22_2 | 660 | 685 | - | - | |
Seca1g01996 | 1164 | SMART | LRR_sd22_2 | 419 | 451 | - | - | |
Seca1g01996 | 1164 | SMART | LRR_sd22_2 | 371 | 397 | - | - | |
Seca1g01996 | 1164 | ProSiteProfiles | Protein kinase domain profile. | 813 | 1099 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca1g01996 | 1164 | Pfam | Leucine rich repeat N-terminal domain | 64 | 104 | IPR013210 | - | |
Seca1g01996 | 1164 | Gene3D | Ribonuclease Inhibitor | 316 | 426 | IPR032675 | - | |
Seca1g01996 | 1164 | Gene3D | Ribonuclease Inhibitor | 63 | 219 | IPR032675 | - | |
Seca1g01996 | 1164 | Gene3D | Transferase(Phosphotransferase) domain 1 | 904 | 1119 | - | - | |
Seca1g01996 | 1164 | MobiDBLite | consensus disorder prediction | 1137 | 1164 | - | - | |
Seca1g01996 | 1164 | SUPERFAMILY | Protein kinase-like (PK-like) | 796 | 1096 | IPR011009 | - | |
Seca1g01996 | 1164 | Gene3D | Ribonuclease Inhibitor | 220 | 315 | IPR032675 | - | |
Seca1g01996 | 1164 | ProSitePatterns | Protein kinases ATP-binding region signature. | 819 | 841 | IPR017441 | GO:0005524 | |
Seca1g01996 | 1164 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 948 | 960 | IPR008271 | GO:0004672|GO:0006468 | |
Seca1g01996 | 1164 | MobiDBLite | consensus disorder prediction | 1138 | 1164 | - | - | |
Seca1g01996 | 1164 | Pfam | Protein tyrosine and serine/threonine kinase | 816 | 1094 | IPR001245 | GO:0004672|GO:0006468 | |
Seca1g01996 | 1164 | SUPERFAMILY | L domain-like | 64 | 337 | - | - | |
Seca1g01996 | 1164 | SUPERFAMILY | RNI-like | 284 | 635 | - | - | |
Seca1g01996 | 1164 | FunFam | LRR receptor-like serine/threonine-protein kinase RCH1 | 904 | 1114 | - | - | |
Seca1g01996 | 1164 | PRINTS | Leucine-rich repeat signature | 660 | 673 | - | - | |
Seca1g01996 | 1164 | PRINTS | Leucine-rich repeat signature | 518 | 531 | - | - | |
Seca1g01996 | 1164 | FunFam | Probable LRR receptor-like serine/threonine-protein kinase At1g34110 | 64 | 220 | - | - | |
Seca1g01996 | 1164 | FunFam | LRR receptor-like serine/threonine-protein kinase RCH1 | 445 | 732 | - | - | |
Seca1g01996 | 1164 | SUPERFAMILY | L domain-like | 605 | 703 | - | - | |
Seca1g01996 | 1164 | Gene3D | Ribonuclease Inhibitor | 427 | 732 | IPR032675 | - | |
Seca1g01996 | 1164 | SMART | serkin_6 | 813 | 1096 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca1g01996 | 1164 | Pfam | Leucine rich repeat | 348 | 408 | IPR001611 | GO:0005515 | |
Seca1g01996 | 1164 | Pfam | Leucine rich repeat | 642 | 696 | IPR001611 | GO:0005515 | |
Seca1g01996 | 1164 | Pfam | Leucine rich repeat | 155 | 215 | IPR001611 | GO:0005515 | |
Seca1g01996 | 1164 | FunFam | Predicted protein | 221 | 318 | - | - | |
Seca1g01996 | 1164 | SMART | LRR_typ_2 | 178 | 202 | IPR003591 | - | |
Seca1g01996 | 1164 | SMART | LRR_typ_2 | 660 | 682 | IPR003591 | - | |
Seca1g01996 | 1164 | SMART | LRR_typ_2 | 612 | 635 | IPR003591 | - | |
Seca1g01996 | 1164 | SMART | LRR_typ_2 | 323 | 347 | IPR003591 | - | |
Seca1g01996 | 1164 | SMART | LRR_typ_2 | 587 | 611 | IPR003591 | - | |
Seca1g01996 | 1164 | SMART | LRR_typ_2 | 371 | 394 | IPR003591 | - | |
Seca1g01996 | 1164 | SMART | LRR_typ_2 | 515 | 539 | IPR003591 | - | |
Seca1g01996 | 1164 | SMART | LRR_typ_2 | 443 | 467 | IPR003591 | - | |
Seca1g01996 | 1164 | SMART | LRR_typ_2 | 683 | 708 | IPR003591 | - | |
Seca1g01996 | 1164 | SMART | LRR_typ_2 | 540 | 563 | IPR003591 | - | |
Seca1g01996 | 1164 | SMART | LRR_typ_2 | 395 | 419 | IPR003591 | - | |
Seca1g01996 | 1164 | PANTHER | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED | 469 | 1097 | - | - | |
Seca1g01996 | 1164 | FunFam | probable LRR receptor-like serine/threonine-protein kinase At1g34110 | 796 | 903 | - | - | |
Seca1g01996 | 1164 | Gene3D | Phosphorylase Kinase; domain 1 | 797 | 903 | - | - | |
Seca1g01996 | 1164 | FunFam | LRR receptor-like serine/threonine-protein kinase RCH1 | 319 | 427 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g01996 | Seca-Chr1 | 40856799 | 40861264 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g01996 | 62 | 1123 | Receptor kinase-like Gene Family | AT5G56040 | 46.747 | 0.0 | 961 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Seca1g01996 | PK_Tyr_Ser-Thr | 4.9e-40 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g01996 | - | - | gmx:100794698 | 1954.1 |