Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01996 ATGGCTGAGTTTTTTAGGCACTTGCTAGTGTCAATGCCGAGGCATTCCTTGAGCAACCACAACCACCACCAAATGCCGAGGCAAGCTTTCATCACAAACCATCACCACCACCATCACCATCACCTTCACCATCTTCATTGTGTTCTCCATGTTTTCTTCTTTACACTTCTTGTCCCTCTTTCCTTTGCTGCTAATGATGAAGTTAGTGTCTTAGTTTCATGGATGCATAGCTCTTCCAAAGTTCCTTCTGCTTTTTCTAACTGGAACCCTTTGGACTCTAGTCCTTGCAATTGGTCTTACATCAAATGCTCTTCAGAAAGCCTTGTCACTGAGATAACCATTCAAACAGTTGAGTTAGCCCTTCCTTTTCCTTCCAATATCTCTTCCCTTCCCTTCCTTCAAAAGCTGGTCATTTCTGGGGCTAACCTTACTGGGGCTATCTCACCTGATATAGGGAATTGCCCTGAGCTTACAGTTATTGATCTTAGCTCAAATAGTCTTGTGGGTGACATTCCTTCAAGTATTGGTAAGCTCAAAAATCTCCAAGATTTGAGCTTGAACTCTAACCAGCTCACTGGGCCAATCCCAAAGGAGCTTGGTGATTGTTTTAATCTTAAGAATCTTGACATTTTTGACAACAACCTTAATGGGGATCTTCCTGCTGAGCTGGGAAAGCTTTCAAATTTGGAAGTTATAAGAGCAGGAGGAAACAAGGACATTGTGGGGAAGATTCCAGATGAGCTTGGAGAATGCAGGAATTTGACAGTGTTAGGTCTTGCTGACACTAAAATTTCTGGTTCAATGCCTGCTTCATTGGGTAAGCTAAGTATGCTTCAGACAATATCTATTTATAGTACATTGCTCTCTGGTGAGATTCCTCCTGAAATAGGCAACTGTTCAGAGCTTGTGAACTTGTTTTTGTATGAGAATGATCTCACTGGTTCCCTGCCAAAGGAGCTAGGTAAGCTTCAGAAGCTGGAAAGAATGCTGCTGTGGCAAAATAGTCTTGTTGGAAGCTTACCTGAGGAAATTGGTAACTGCAGAAGCTTGAAGATTCTTGATGTCTCCTTAAATTTATTATCTGGTGGAATACCTCAAAGTTTGGGGCAACTCTCAAATCTTGAAGAGCTTATGCTAAGCAACAATAACATCTCTGGTTCAATACCACCTGCTCTTTCCAATCTCACAAACCTCATACAGTTGCAGTTAGATACAAATCAGCTATCAGGTTCTATTCCACCTGAGCTTGGAAGGTTGACAAAGCTAACAGTCTTTTTTGCTTGGCAGAACAAGCTTGAAGGTGGCATTCCATCAGCATTGGGAGATTGTAGAAGCCTTGAGGCTTTGGATTTGTCATACAATGCACTCACTGATAGCTTACCCCCAGGCCTATTTAAGCTTCAAAACTTGACAAAGCTTTTACTAATCTCTAATGATATTTCAGGCCCCATTCCCCATGAGATTGGTAACTGCAGTTCTCTCATTAGGCTCAGGCTTGTAGACAACAGAATCAATGGGGAGATACCAAAAGAAATTGGCTTCCTCAACAACCTCAGTTTCCTTGATCTGTCTGAAAATCATCTTACTGGGTCAGTACCACAAGAGATTGGAAACTGTAAAGAGCTGCAAATGCTGAATCTAAGCAATAACTCCCTTTCTGATGCTTTGCCTAGTCATTTGTCTTCCCTCACAAGGCTAGAGGTTTTGGATGTTTCTCTAAATAACTTTTCTGGTGAGGTTCCAATGAGTATTGGTCAACTCACTTCACTTCTTAGAGTCATTCTAAGCAAAAACTCTTTCTCTGGATCAATTCCCTCTTCACTTGGGCAATGTTCAGGTCTTCAACTGCTAGACCTTAGCAGCAACATGTTCTCAGGGAGCATCCCATCAGAACTGTTTCAAATTGAAGCACTTGATATTGCTTTAAATTTGAGTCATAATGCATTATCTGGTGTAATCCCACCAGAGATTTCATCTTTGAACAAGCTTTCTGTTCTAGACCTTTCACACAACATGCTTGAAGGTGACTTGATGGTGTTTTCAGGGCTTGAAAATCTTGTTTCTCTGAATATTTCCTACAACAAATTCACTGGCTATCTTCCAGACAGAAAGTTATTCCACCAACTATCAGCTACAGACTTTGCTGGAAATCAAGGTTTGTGTCCTAATGGTCATGATTCATGTTTTGTTAGCAATGATGCAATGGAAAAAATGCTGAATGGTACTAATTCTAAGAGGTCAAAGATAATCAAACTGGCTATTGGATTGCTCAGTGCCTTGACTGTGGCAATGGCAATCTTTGGAGTTGTTACAGTGTTGAGAGCAAGGAAAATGATTAGAGATGACAATGATTCTGAGATGGGAGGAGATTCATGGCCTTGGCAGTTCACCCCATTCCAAAAGGTGAATTTCTCTGTGGAGCAAGTTTTGAAATGCTTGGTGGAATCCAATGTAATTGGAAAAGGGTGTTCAGGGATTGTGTATCGTGCAGATATGGAAAATGGTGATGTTATTGCTGTGAAAAGACTATGGCCAACAACAATGGCTGCTAGATATGATACTCAAAGTGACAAGTTAGCAGTTAATGGAGGAGTTCGTGATTCCTTTTCAGCTGAGGTAAAAACTCTTGGTTCAATTCGCCACAAGAACATTGTAAGGTTCTTGGGTTGCTGTTGGAACAGAAACACAAGGCTACTTATGTATGATTACATGCCAAATGGGAGCCTAGGAAGTCTTCTTCATGAAAGAAGTGGAAATTGCTTGGAATGGGACATCAGATTTCGGATAATACTAGGAGCAGCTCAAGGTTTGGCTTATTTACACCATGATTGTGCTCCTCCCATTGTTCATAGGGACATTAAGGCCAACAACATCCTCATAGGCCCTGAATTTGAACCATACATAGCTGATTTTGGCCTTGCAAAACTTGTTGATGATGGAGATTTTGCAAGATCTTCTAGTACACTAGCTGGTTCCTATGGTTACATAGCTCCTGAGTATGGCTATATGATGAAGATAACAGAGAAAAGTGATGTTTACAGCTATGGTATTGTTGTAATGGAAGTGCTAACAGGGAAGCAACCAATTGATCCAACAATACCTGATGGACTTCATATTGTTGATTGGGTGAAACAGAAAAGAGGGGGAGTTCAAGTGCTAGATGAAAGCTTAAGAGCTAGGCCAGAATCTGAAATTGAGGAGATATTGCAGACCTTAGGTGTGGCTTTGCTGTGTGTAAACTCAAGTCCAGATGATAGACCAACCATGAAAGATGTGGTAGCAATGATGAAGGAAATTAGGCAGGAGAGAGAGGAATGTGTGAAAGTTGACATGCTTCTTGATGGATCTTCAGCAAATGATCAACAAGAAAGTAATCATTCCAATGAAGAACCAATGGCAATGATGAAACATGCATGCCCAACAAGCAGCAGCAGTAGCAGCAACACAAATCTGCATCTAAATTACTCTCCTCATTGTAGTCCAACACTAAAGTAA 3495 0.41 MAEFFRHLLVSMPRHSLSNHNHHQMPRQAFITNHHHHHHHHLHHLHCVLHVFFFTLLVPLSFAANDEVSVLVSWMHSSSKVPSAFSNWNPLDSSPCNWSYIKCSSESLVTEITIQTVELALPFPSNISSLPFLQKLVISGANLTGAISPDIGNCPELTVIDLSSNSLVGDIPSSIGKLKNLQDLSLNSNQLTGPIPKELGDCFNLKNLDIFDNNLNGDLPAELGKLSNLEVIRAGGNKDIVGKIPDELGECRNLTVLGLADTKISGSMPASLGKLSMLQTISIYSTLLSGEIPPEIGNCSELVNLFLYENDLTGSLPKELGKLQKLERMLLWQNSLVGSLPEEIGNCRSLKILDVSLNLLSGGIPQSLGQLSNLEELMLSNNNISGSIPPALSNLTNLIQLQLDTNQLSGSIPPELGRLTKLTVFFAWQNKLEGGIPSALGDCRSLEALDLSYNALTDSLPPGLFKLQNLTKLLLISNDISGPIPHEIGNCSSLIRLRLVDNRINGEIPKEIGFLNNLSFLDLSENHLTGSVPQEIGNCKELQMLNLSNNSLSDALPSHLSSLTRLEVLDVSLNNFSGEVPMSIGQLTSLLRVILSKNSFSGSIPSSLGQCSGLQLLDLSSNMFSGSIPSELFQIEALDIALNLSHNALSGVIPPEISSLNKLSVLDLSHNMLEGDLMVFSGLENLVSLNISYNKFTGYLPDRKLFHQLSATDFAGNQGLCPNGHDSCFVSNDAMEKMLNGTNSKRSKIIKLAIGLLSALTVAMAIFGVVTVLRARKMIRDDNDSEMGGDSWPWQFTPFQKVNFSVEQVLKCLVESNVIGKGCSGIVYRADMENGDVIAVKRLWPTTMAARYDTQSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERSGNCLEWDIRFRIILGAAQGLAYLHHDCAPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVMEVLTGKQPIDPTIPDGLHIVDWVKQKRGGVQVLDESLRARPESEIEEILQTLGVALLCVNSSPDDRPTMKDVVAMMKEIRQEREECVKVDMLLDGSSANDQQESNHSNEEPMAMMKHACPTSSSSSSNTNLHLNYSPHCSPTLK. 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01996 1164 ProSiteProfiles Leucine-rich repeat profile. 373 396 IPR001611 GO:0005515
Seca1g01996 1164 SMART LRR_sd22_2 178 199 - -
Seca1g01996 1164 SMART LRR_sd22_2 660 685 - -
Seca1g01996 1164 SMART LRR_sd22_2 419 451 - -
Seca1g01996 1164 SMART LRR_sd22_2 371 397 - -
Seca1g01996 1164 ProSiteProfiles Protein kinase domain profile. 813 1099 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01996 1164 Pfam Leucine rich repeat N-terminal domain 64 104 IPR013210 -
Seca1g01996 1164 Gene3D Ribonuclease Inhibitor 316 426 IPR032675 -
Seca1g01996 1164 Gene3D Ribonuclease Inhibitor 63 219 IPR032675 -
Seca1g01996 1164 Gene3D Transferase(Phosphotransferase) domain 1 904 1119 - -
Seca1g01996 1164 MobiDBLite consensus disorder prediction 1137 1164 - -
Seca1g01996 1164 SUPERFAMILY Protein kinase-like (PK-like) 796 1096 IPR011009 -
Seca1g01996 1164 Gene3D Ribonuclease Inhibitor 220 315 IPR032675 -
Seca1g01996 1164 ProSitePatterns Protein kinases ATP-binding region signature. 819 841 IPR017441 GO:0005524
Seca1g01996 1164 ProSitePatterns Serine/Threonine protein kinases active-site signature. 948 960 IPR008271 GO:0004672|GO:0006468
Seca1g01996 1164 MobiDBLite consensus disorder prediction 1138 1164 - -
Seca1g01996 1164 Pfam Protein tyrosine and serine/threonine kinase 816 1094 IPR001245 GO:0004672|GO:0006468
Seca1g01996 1164 SUPERFAMILY L domain-like 64 337 - -
Seca1g01996 1164 SUPERFAMILY RNI-like 284 635 - -
Seca1g01996 1164 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 904 1114 - -
Seca1g01996 1164 PRINTS Leucine-rich repeat signature 660 673 - -
Seca1g01996 1164 PRINTS Leucine-rich repeat signature 518 531 - -
Seca1g01996 1164 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 64 220 - -
Seca1g01996 1164 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 445 732 - -
Seca1g01996 1164 SUPERFAMILY L domain-like 605 703 - -
Seca1g01996 1164 Gene3D Ribonuclease Inhibitor 427 732 IPR032675 -
Seca1g01996 1164 SMART serkin_6 813 1096 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01996 1164 Pfam Leucine rich repeat 348 408 IPR001611 GO:0005515
Seca1g01996 1164 Pfam Leucine rich repeat 642 696 IPR001611 GO:0005515
Seca1g01996 1164 Pfam Leucine rich repeat 155 215 IPR001611 GO:0005515
Seca1g01996 1164 FunFam Predicted protein 221 318 - -
Seca1g01996 1164 SMART LRR_typ_2 178 202 IPR003591 -
Seca1g01996 1164 SMART LRR_typ_2 660 682 IPR003591 -
Seca1g01996 1164 SMART LRR_typ_2 612 635 IPR003591 -
Seca1g01996 1164 SMART LRR_typ_2 323 347 IPR003591 -
Seca1g01996 1164 SMART LRR_typ_2 587 611 IPR003591 -
Seca1g01996 1164 SMART LRR_typ_2 371 394 IPR003591 -
Seca1g01996 1164 SMART LRR_typ_2 515 539 IPR003591 -
Seca1g01996 1164 SMART LRR_typ_2 443 467 IPR003591 -
Seca1g01996 1164 SMART LRR_typ_2 683 708 IPR003591 -
Seca1g01996 1164 SMART LRR_typ_2 540 563 IPR003591 -
Seca1g01996 1164 SMART LRR_typ_2 395 419 IPR003591 -
Seca1g01996 1164 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 469 1097 - -
Seca1g01996 1164 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 796 903 - -
Seca1g01996 1164 Gene3D Phosphorylase Kinase; domain 1 797 903 - -
Seca1g01996 1164 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 319 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01996 Seca-Chr1 40856799 40861264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01996 62 1123 Receptor kinase-like Gene Family AT5G56040 46.747 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g01996 PK_Tyr_Ser-Thr 4.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01996 - - gmx:100794698 1954.1