Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01994 ATGGTGCCTCATCAACAGCAATTTTCACAACCTATTGGGTATGTGGGTGAACCTTACACAAATGGTACTACTTCAAACAACATGAATAGTACTCATAACCATAACCCTTACCAGCCTGCTACTGAATACCACCACATGCTGGAATCAACTCATTCATGGCCTCCTCCTTCTCAGTTCACTGTTGCTTCTCACTACAATCAGTCCTTTGGGGACAATAATCTCCTTCCTCCGGTGGCAGCGGCTTTCGGCGGTGGCTATGGTAATCAGTATCCTTATCAGTTTTTCCATGGCCCTGGTGATAGGTTAATGAGATTAGGCCCTTCAGCTACTAAAGAAGCAAGGAAGAAGAGGATGGCGAGACAGAGAAGGTTCTTGACTCATCACAGGCATCATAATAGTCACCATCAAAATCAAGCTTCTGACAGATTGGGAGGGGATAATTGCACCACTGTTGTTGCTGGTTCTCATGCAAATCCAGCAAATTGGATGTACTGGCAGACCATGGCTGCCGGTGGCGCTCCTCTCTTGGCACCAGTAGTTCCGGCTGAGCCGCTGCCGGTGGAGCGGCCGGCCATGCAGACACAGAATTGTCATCAGAGTAGAGTTGCATCTGATAGGAGACAGGGTTGGAAGCCAGAGAAGAACTTGAGGTTCCTTCTTCAAAAGGTGTTAAAGCAAAGTGATGTTGGAAGTTTGGGGAGAATTGTTTTGCCAAAAAAAGAGGCAGAAACCCATTTGCCAGAACTGGAGGCAAGGGATGGAATTACCATTACAATGGAAGACATTGGAACTTCTCGAGTTTGGAATATGCGCTACAGCATCAGATACTGGCCAAACAACAAAAGCAGGATGTATTTGCTTGAGAACACTGGGGATTTTGTGAGAGCCAATGGACTCCAAGAAGGAGATTTCATAGTGATATATTCAGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTGAAAGTGAGGCAAGGGGCGAAACCAGAGACAAAGAAAGGAGGAAAATCTCAGAAAAACCAGCATGGGAGTAATGCTGCAGCTACTACTACAGCTGGTACTGTTGCAACTAATAATGGCACACCATCTTCACAGAAGCAAAAATCTGAAAAGGTAGTAAATTAA 1125 0.4524 MVPHQQQFSQPIGYVGEPYTNGTTSNNMNSTHNHNPYQPATEYHHMLESTHSWPPPSQFTVASHYNQSFGDNNLLPPVAAAFGGGYGNQYPYQFFHGPGDRLMRLGPSATKEARKKRMARQRRFLTHHRHHNSHHQNQASDRLGGDNCTTVVAGSHANPANWMYWQTMAAGGAPLLAPVVPAEPLPVERPAMQTQNCHQSRVASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGITITMEDIGTSRVWNMRYSIRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKFMIRGVKVRQGAKPETKKGGKSQKNQHGSNAAATTTAGTVATNNGTPSSQKQKSEKVVN. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01994 374 SMART B3_2 220 322 IPR003340 GO:0003677
Seca1g01994 374 ProSiteProfiles B3 DNA-binding domain profile. 220 324 IPR003340 GO:0003677
Seca1g01994 374 CDD BfiI_C_EcoRII_N_B3 218 321 - -
Seca1g01994 374 Pfam B3 DNA binding domain 221 319 IPR003340 GO:0003677
Seca1g01994 374 MobiDBLite consensus disorder prediction 338 374 - -
Seca1g01994 374 MobiDBLite consensus disorder prediction 325 374 - -
Seca1g01994 374 SUPERFAMILY DNA-binding pseudobarrel domain 219 317 IPR015300 -
Seca1g01994 374 Gene3D - 211 331 IPR015300 -
Seca1g01994 374 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 71 355 IPR044800 GO:0003700
Seca1g01994 374 FunFam B3 domain-containing transcription factor FUS3 216 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01994 Seca-Chr1 40825913 40827893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01994 63 354 B3 DNA Binding Superfamily AT3G24650 56.825 3.79e-100 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca1g01994 B3 6.1e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01994 K09287 - gmx:100810343 542.347