Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01992 ATGAGTGATGAGTATATAAGATCTGCTCTTGATTATGTAGCAAATCCGAAGGATATGAATTTGTTTAGGGACACTTTTTATAACTCTGCAGGGAAAGAGGGGAAATTCAGGGGAGACCCAAATTTATATGTGGTTGGTTGGGCTAATTTTGCATTTTATGCCACTGATTTTGGGTGGGGAAAACCTGTTTGTTTGGTTCCTGGGGGCATTAATTCTGATGGTAAGGCTTTCATTCTTAATACAGGAAGTGGTGATGGGTTTATTGTTGCCATTTGTTTGCAACCTTCACATGTTGATGCTTTGAAGAAGTTGTTTTATGAGGATATGGAGACTACTACTTCCTAG 345 0.3884 MSDEYIRSALDYVANPKDMNLFRDTFYNSAGKEGKFRGDPNLYVVGWANFAFYATDFGWGKPVCLVPGGINSDGKAFILNTGSGDGFIVAICLQPSHVDALKKLFYEDMETTTS. 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01992 114 Gene3D - 1 108 IPR023213 -
Seca1g01992 114 Pfam Transferase family 2 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01992 Seca-Chr1 40613650 40613994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01992 1 107 Monolignol Biosynthesis Gene Families AT5G48930 36.697 3.99e-17 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01992 K13065 - gmx:100819383 180.644