Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01984 ATGGTTTATACTTCCCTCCCAGCATATATTGATCCAGCCAACTGGCAACAACAGCAGCAACCAAATCATCAAGGGGGAAATACCGGTGTAACTTCCCCTCTTCTGCACTCTACACTACCGCCGCCGCCCCCTCCAGCCCCATCGCAGCCTCATGGAGGCTCGATCAGGCCGGGTTCGATGGCGGATAGGGCTCGAATGGCCAACATACCTATGCAAGAAGCTCAACAAAAATGTCCAAGATGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCTCGCCACTTTTGCAAGACTTGTAGAAGGTACTGGACAAGAGGCGGTGCCCTCCGCAACGTCCCCGTCGGCGGAGGTTGCCGGAGAAACAAGAGAAGCAAATCAACCAACACCGCCGCCGCCACCTCCAAGTCTCCGGCAACCTCGGATCGCCAAACTGGTAGCTCCTCCGCCGTTGACATGGCAGGCCTTGGCCCCACGGCACCGCCGGCAATGAGATTCATGGCTCCATTGCATCAACTAAGTGATCAACACCACCATATTGGAGAGATAGGGTTAAACTATGGGTTGATTGGAGGAGTAGGAGAGTTGAATTTCAACACTAGTTTGGGTGGTGGTGGTAATTCTTTGTTATCTTCTGTTGGTTTGGAGCAATGGAGAGTGCCACAAACTCACCAATTTCCCTTCTTGTCTGGTTTAGAAGCTTCATCATCACATGGGTTGTTGTACCCTTTTGAAGGTGGTAGTAGTAATAGTACTACAACTTCTGGGGTGATATCTCAACTTGCTTCAGTGAAAATGGAAGATAATAATAATAATAATAATAATAATAATCATGAGCTTGGTTTGTCAAGACAATTCTTGGGAATCAACAATCCAACAAGTGATCAGCAATATTGGACAAGTGCTGCTGGTGGTGGTGCTACTTCAGCTTGGACAGATCTTTCAGCTTTTAGCTCTTCTTCTGCTACTACCAATCCACTATAG 1002 0.479 MVYTSLPAYIDPANWQQQQQPNHQGGNTGVTSPLLHSTLPPPPPPAPSQPHGGSIRPGSMADRARMANIPMQEAQQKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKSTNTAAATSKSPATSDRQTGSSSAVDMAGLGPTAPPAMRFMAPLHQLSDQHHHIGEIGLNYGLIGGVGELNFNTSLGGGGNSLLSSVGLEQWRVPQTHQFPFLSGLEASSSHGLLYPFEGGSSNSTTTSGVISQLASVKMEDNNNNNNNNNHELGLSRQFLGINNPTSDQQYWTSAAGGGATSAWTDLSAFSSSSATTNPL. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01984 333 MobiDBLite consensus disorder prediction 128 158 - -
Seca1g01984 333 MobiDBLite consensus disorder prediction 16 59 - -
Seca1g01984 333 MobiDBLite consensus disorder prediction 120 162 - -
Seca1g01984 333 MobiDBLite consensus disorder prediction 36 51 - -
Seca1g01984 333 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 52 273 IPR045174 GO:0003700|GO:0006355
Seca1g01984 333 MobiDBLite consensus disorder prediction 16 35 - -
Seca1g01984 333 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Seca1g01984 333 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Seca1g01984 333 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01984 Seca-Chr1 39990409 39991846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01984 1 326 C2C2-Dof Transcription Factor Family AT2G37590 37.047 1.70e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca1g01984 zf-Dof 6.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01984 - - gmx:100796820 411.764