Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01983 ATGGCGGCGGAAAGCAATGCTCATCAGGTTCTCCAAAATCTCATCCACATTGCCAACCAAATCTCTACCTTCAACTTCAAGTTCATCATCAAAAGGCAATGCCGAGATCTCAGCCGCAGGATCACCTTCCTCACTCCTCTCTTCCATGAACTCCAAGACGACGTCGTTTTCGTTCCCTACGACGCTCTCATTTCCCTCCAACAAGCCCTCCTTGCCGCCAAGGAATTGCTCCACTTTGCTACACATGCAAGCCAGCTTTACATGATACTGGAGAGAGAGCAAATTAAGTTCAAATTCACCAATGTTGCTGCTCGTTTTGAACAAGCTATAAGCAATGTCTCTTGTGACAAACTTGAAATTTCTGAAGAAATCAAGGAGCAGGTTGCACTTGTGGCTGCTCAATTTGGAAGGGCCAAAGAGCGTTTTGATCCACCCGGTTGTCTTGAGCTTTATGAGCACCTGTTGTCAGTTAGGAATCAGAGATGTGATGTGAACGCTGAACCTGCTGAACTACGTTTAATCTGTGAAAAGCTAAAATTCAGGAATTTGGAAGACATTAAACAAGAGACACTTGCATTACATAAGATGGTTGTTGATTTGGGTGGTGGTTTTGAGAAAAGAATGCAGGAGATGTCAATGGTGCTGAAAAAAATTGAAGATTTCATGCTGAAGGAATCTGCAAATATTATTGTATCGTCAAGTGATAATTCCCCTCCTCAGTTGCTGGTTATACCGGATGAGTTTCGCTGCCCAATATCTCTAGAGCTAATGAAAGATCCTGTTATCATTTGCACAGGGCAGACATATGAACGAGCTTGCATAAAGAAATGGCTGGAAACAGGGCATGGGACATGTCCTAAGACTCGGCAGATTCTTTCCAGCCCCATCCTCATACCTAACCATGTTTTATACAGCCTGATATTGAATTGGTGTGAGACAAATGGAGTGGAACCACCTAAAAGGTTAGGAAATTTACGGCTCTGTAAGGCAACATCAGATGGCTCTTCTGAATTAATAGATCTCGATACTCTAATGTCCAAACTTACTTCCAGTGACATTGAGGATCGGCGCTGCGCAGCAGGGGAGCTCCGTCTTCTTGCGAAGAACAATGGTCAAAATCGAATGTTAATTGCTGAAGCTGGTGCTATACCCCTCCTTGTTGATCTTCTCTATGTACCTGATGCTAGCACCCAAGAGCATGCAGTTACTGCTCTTCTGAACCTGTCTATCAATGAGGATAATAAAGAGTGCATCATGGCTTCTGAGGCTGTGCCGGGAATCCTTCATGTACTGAAAAATGGTAGCATGGAAGCTCGGGAAAATGCAGCAGCCACTTTTTTCAGCCTCTCTGCAGTGCATGAGAACAAAGTGGCTATTGGTGCATCTGGAGCAATCCAGGCACTAGTTACTCTTTTTTGCGAAGGGAGTCAAAGAGCAAAGGTGGATGCTGCAACAGCACTGTTCCATCTTTGTTTGTATCAAGGGAACAAAGGACAAGCAGTTAGGGCTGGTATTGTGCCCAAGTTGATAGAAATGCTAACAGAACCTGGTGGGGAGATGAGGGACGAGGCTTTGGCAATCATGGCTTTAGTAGTTAGCCATCCTGATGGAAAAGTAGCAATTGGATCTATGAATGTTGTGCCCTCTTTGGTGGAATTAATCAGGAACGGATCTCCTAGAAACAAAGAGAATGCAACTTCGGTGCTAGTGCACCTCTGCAGTGGAAATCCACTACATCTATCAGTTGTCAGTTCACTTGGGGTGATCAATCCTCTCTTGGACCTAGCAGAAAATGGTTCTGAAAGGGGCAAGCGGAAAGCTGCTGAGCTTCTTGAGTTGATAGGCATTTAG 1851 0.4457 MAAESNAHQVLQNLIHIANQISTFNFKFIIKRQCRDLSRRITFLTPLFHELQDDVVFVPYDALISLQQALLAAKELLHFATHASQLYMILEREQIKFKFTNVAARFEQAISNVSCDKLEISEEIKEQVALVAAQFGRAKERFDPPGCLELYEHLLSVRNQRCDVNAEPAELRLICEKLKFRNLEDIKQETLALHKMVVDLGGGFEKRMQEMSMVLKKIEDFMLKESANIIVSSSDNSPPQLLVIPDEFRCPISLELMKDPVIICTGQTYERACIKKWLETGHGTCPKTRQILSSPILIPNHVLYSLILNWCETNGVEPPKRLGNLRLCKATSDGSSELIDLDTLMSKLTSSDIEDRRCAAGELRLLAKNNGQNRMLIAEAGAIPLLVDLLYVPDASTQEHAVTALLNLSINEDNKECIMASEAVPGILHVLKNGSMEARENAAATFFSLSAVHENKVAIGASGAIQALVTLFCEGSQRAKVDAATALFHLCLYQGNKGQAVRAGIVPKLIEMLTEPGGEMRDEALAIMALVVSHPDGKVAIGSMNVVPSLVELIRNGSPRNKENATSVLVHLCSGNPLHLSVVSSLGVINPLLDLAENGSERGKRKAAELLELIGI. 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01983 616 Gene3D - 327 613 IPR011989 -
Seca1g01983 616 SMART arm_5 576 616 IPR000225 GO:0005515
Seca1g01983 616 SMART arm_5 369 410 IPR000225 GO:0005515
Seca1g01983 616 SMART arm_5 534 574 IPR000225 GO:0005515
Seca1g01983 616 SMART arm_5 452 492 IPR000225 GO:0005515
Seca1g01983 616 SMART arm_5 411 451 IPR000225 GO:0005515
Seca1g01983 616 SMART arm_5 493 533 IPR000225 GO:0005515
Seca1g01983 616 SMART Ubox_2 247 310 IPR003613 GO:0004842|GO:0016567
Seca1g01983 616 ProSiteProfiles U-box domain profile. 243 317 IPR003613 GO:0004842|GO:0016567
Seca1g01983 616 SUPERFAMILY RING/U-box 231 320 - -
Seca1g01983 616 FunFam RING-type E3 ubiquitin transferase 327 615 - -
Seca1g01983 616 Pfam Armadillo/beta-catenin-like repeat 535 574 IPR000225 GO:0005515
Seca1g01983 616 Pfam Armadillo/beta-catenin-like repeat 372 409 IPR000225 GO:0005515
Seca1g01983 616 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 381 423 IPR000225 GO:0005515
Seca1g01983 616 CDD RING-Ubox_PUB 245 297 IPR045210 -
Seca1g01983 616 Pfam U-box domain 244 314 IPR003613 GO:0004842|GO:0016567
Seca1g01983 616 PANTHER U BOX DOMAIN-CONTAINING 31 613 - -
Seca1g01983 616 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 317 IPR013083 -
Seca1g01983 616 FunFam RING-type E3 ubiquitin transferase 244 316 - -
Seca1g01983 616 Gene3D - 9 116 IPR036537 GO:0007166
Seca1g01983 616 SUPERFAMILY ARM repeat 340 614 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01983 Seca-Chr1 39915576 39922336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01983 12 614 U-box Gene Family AT3G46510 52.504 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01983 - - vum:124836668 813.142