Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01981 ATGTCTGTGTGGGCATTTGAAAGACATGCACATAGTGATCACAAAAAACCCTATGAACATATTTACACCCTACAAACACAAGAAAATCTCCAAGATTGCCTCATTGCTGTGTGGCTTCATTCATCTGAAAGAGAACGCCGTCAAGAATTCTGCTTTTTTCCCAAGGAAAAACAAGAAGATGATCCTTGTTCAATATGTGCAAATGGGGGAGACATATTCCGTTGCGAGCATTGTCCCTCAGCATTCCATGCATCCTGTCTGAATATGGAGATATATATGTATTTTAAAATGCAGAGGGCTCCCCGTCGTGATTGGTCTTGTCCCTACTGCGTTTGTAAGTACTGTAGTCTCAGGGTTTATGGAAAACAAAGGCAACTCATCACATGCTTGCAGTGTGACAAAAATTTTCACTGGCAATGTTTAAAAGAATTCTCCAAAGACCCTGTGGACATATATGATGAACTGGAGAGGTCAATTGCAGTCAGTAATGAGTTTGAAAACTACACTTGGTCAATCATCCGCCCTCAGACAACCTTAGCTATGACTAGATATTTTGAATGCAATGCAAAGGTCCTAGTAGCTTTCTCATTAATGAATGAATGTTTTGAGACAATAACTGACAGACACACCGGCATCAATGTGGTTCAAAATGTACTATACAGTTGTAGATCACCAGATTTAACCAGGGTCAATTTTGGGCGTTTTCATATATTTATCCTGGAGGAAGATGATGCAATTGTATGTGCAGCTTCTATAAGGATTCATGGGAGGGAGGTTGCAGAAATGCCTTTTATTGCCACAGAAGGGACATGCAGGAGACAAGGAATTTGCAGGAATTTAATGATTGTAATTGAATCGTTCCTATGTGTCCTTAAAGTGCAGAAGCTGGTCATTCAATCTGTTCCAGATACTTCGGATATGTGGAAGCACAAGTTTGGTTTCAAAGAACTGGCTGGGAACTTTGAGAAAGAACTTGCCTCCTATAACATTTTGACGCTCCCTCATGCTTCAAAACTATACAAAGACTTGGGTGGTAATCCAAATTGA 1047 0.4011 MSVWAFERHAHSDHKKPYEHIYTLQTQENLQDCLIAVWLHSSERERRQEFCFFPKEKQEDDPCSICANGGDIFRCEHCPSAFHASCLNMEIYMYFKMQRAPRRDWSCPYCVCKYCSLRVYGKQRQLITCLQCDKNFHWQCLKEFSKDPVDIYDELERSIAVSNEFENYTWSIIRPQTTLAMTRYFECNAKVLVAFSLMNECFETITDRHTGINVVQNVLYSCRSPDLTRVNFGRFHIFILEEDDAIVCAASIRIHGREVAEMPFIATEGTCRRQGICRNLMIVIESFLCVLKVQKLVIQSVPDTSDMWKHKFGFKELAGNFEKELASYNILTLPHASKLYKDLGGNPN. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01981 348 CDD NAT_SF 237 298 - -
Seca1g01981 348 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 193 334 IPR000182 GO:0016747
Seca1g01981 348 ProSiteProfiles Zinc finger PHD-type profile. 60 113 IPR019787 -
Seca1g01981 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 120 IPR013083 -
Seca1g01981 348 PANTHER PHD FINGER PROTEIN 12 1 343 IPR042163 GO:0003714|GO:0045892
Seca1g01981 348 SUPERFAMILY FYVE/PHD zinc finger 57 116 IPR011011 -
Seca1g01981 348 Gene3D - 195 326 - -
Seca1g01981 348 Pfam PHD-finger 63 113 IPR019787 -
Seca1g01981 348 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 231 316 IPR016181 -
Seca1g01981 348 SMART PHD_3 62 111 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01981 Seca-Chr1 39887474 39889430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01981 1 343 PHD Transcription Factor Family AT4G14920 35.501 2.43e-69 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca1g01981 PHD 5.9e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01981 - - vum:124834316 346.665