Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01958 ATGGCAACGGCAACATACCCCCCACCGCCTCCTTATTACAGACTTTACAAAGATTACTTGCAAGACCCTAAGTCTGCTCCGGAGCCTCCACCACCTATTGAAGGGACTTACATTTGTTTTGGAGGCAATTACACTACTAGTGACGTGCTACCAAGCTTGGAAGAACAAGGGGTGCGCCAGCTCTATTCTAAGGGGCCTAATGTTGATTTCAAGAAGGAGCTGAAGTTACTTAATGGAGAATTACAACTACACATTTTGGAACTTGCTGATATTCTTATTGAGAGACCATCACAGTATGCGAGGAGAATCGAAGAAATTTCAACTGTATTCAAAAACTTACATCACCTTTTAAATTCACTGCGTCCTCATCAGGCAAGAGCAACATTGATTCACATTTTGGAACTTCAAATACAGCGCCGTAAACAAGCTGTAGAGGACATAAAGAGGAGGAGAGAAGAAGCTCGAAGACTCCTTAACGAGTCCCTGGCAACACTTGATGGCCATTAG 507 0.4339 MATATYPPPPPYYRLYKDYLQDPKSAPEPPPPIEGTYICFGGNYTTSDVLPSLEEQGVRQLYSKGPNVDFKKELKLLNGELQLHILELADILIERPSQYARRIEEISTVFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEARRLLNESLATLDGH. 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01958 168 Coils Coil 130 164 - -
Seca1g01958 168 Gene3D - 60 159 IPR044888 -
Seca1g01958 168 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7 2 168 IPR009244 GO:0003712|GO:0006357|GO:0016592
Seca1g01958 168 Pfam MED7 protein 4 158 IPR009244 GO:0003712|GO:0006357|GO:0016592
Seca1g01958 168 SUPERFAMILY Mediator hinge subcomplex-like 66 159 IPR037212 GO:0016592
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01958 Seca-Chr1 38416916 38421060 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED7 Seca1g01958 Med7 2.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01958 K15148 - gmx:100792250 302.367