Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01956 ATGTTGTATCACTTTAGCAGTGTTGATGTGGCTTTTGAATTTTACAACACATATGCACAGAAGAGGGGGTTTGCAGCTCGTAAATGGAATGTTGTAAAAAATAAGCATGGACAAGTGACTCAGAAAACTTTTGTTTGTTTCAAGCAAGGTTTTCGTTTGAAGAAGCATTTGATGAAGAAAAATCGTAAGAGGGAACCAAGAGTGTTAACTTGGTGTGGATGTCCAGCTTTCTTTCGTGTCCGGTTTCTAAGTGAGACCAATCGATGGCATGTTAAAGCTTTTTTAGATAGTCATAGTCACGAGATGTTAGGTGAAAAGATTGTTGGTATGTTGTGTGCACATAGGAAGATGCATGAATGTGACTTAATGCAGTTGAATAGTATGAGGGATGCTGGGATTGGTGTAACTCAAATATACGGGTTAGCTGCAAATCAGTCAAGTGGGTATGACAGGCTCGGGTTTAGGAAAATAGATATGTATAATGAGATTGAGAGGCAAAGACGCATCCTTGTTAGTGATGTTAGAGCTGCTTTTGCCTATCTAAGACACTTGCGTTCAACAGATTCTGAAATGTTTTGGAGGCACCCTGCTGACGCAGAAGGCAGGGTACAACACTTGTTTTGGACTGATGGTAGAAGTCAAGCCGATTACAAGCTTTTTGGGGATGTGGTTGCATTTTATGCAACCTATCGCCGTAATAAATACATGTCCCTGTTTGTAGTGTTTGCTGGTGTTAACCATCACAACCAAACTGTTGTGTTTGGTAGTAGGTTAATTGTAAAGGAAACTGAGGAAACGTATGTATGGCTACTTAAGCAATTTTTTGAAGCAATGAAAGGTAAGTTGCCAATATCTGTCATAACTGATGGTGATCTAGCAATGAAGAACGCAATCAGATTTGTATTTCCGTCTGCCCACCATAGATTGTGCGCATGGCATTTGTTAAGAAATGCAACTACCAACATAAGCAATCCGAAGTTCACCTCTAAATTTCGTCGATGTATGCTTGGTGATTATGACGTGGGAAGGTTTCGGGTGAAGTGGGACGAATTAATTGTTGAGTTTGATTTGCATGGCAACTCATGGATAAAAGAACTTTATGAGAAGAGGAAAATGTGGGCTACAACACACATAAGGGGGGATTTTTTTGCAGGGTTTAGAACAACATCACGGTGCGAGGGGATGCATGCTCAGGTTGGTAGATATGTACACTATCGTAACAACCTTACGGATTTTCTAAAGCAGTTCACGCGTTATTTGGGCTACACGAGGCAACGGGAGCTAGAGGCTGATTTTGAATCAATCATTGGTGAGCCTGTGTTGCAAACATCTTTTGAGGATATTGAGCGGTCTGCAGCGCAAGTTTATACAAGGAAGGTATTTTTGCTATTTAGGACTGTATTGGATAGGGCTTGTGGTGTAAAGGTTGTCAGTTGTGAGGAGACACCAAATTGCCTCATATATGTTATGTGTAGGCGATCATATCCTGATTGTAAATGGTATGTATCTATGATACCGTCAATCACTGAATTCAAGTGTTCGTGCCTAAGAATGGAGTCACTTGTGATTCCCTGTGAACATATAATTGCCTTGTTGCGACATCTAGAGATAAAGGTTTTGCCAGAATCTCTTGTCATGCAAAGATGGACAAAGAATGCTAAACAATGCGTTGAGGACAGTGATGAAAATTCTTCTGCTGTGGGGCGTTCTAAAGCTATATCTTTGCTATCTGATTGCTATGAGGTATGCAGGTTGTCTGGAAAGTGTGTGCAAAAGTTGGATCTCTCTAAACAAACAATTAGGGAATTATTGCAACGGTTGAGAGATCCTAACATGCAAAACAACACAGATGGTGGCAATGACAATGATGACGGTGAAGAAGTCCATGTGAGGGACCCTGTACGTGCTAGGACTAAAGGTTGTGGACCAAGAACAACTCTAGCAGGTGGTAAGGGAAATAGGCGAACAACTTGTTGTAGCATATGCCAAGAACCAGGACATAACAAGAAGACATGTCCTAATTGA 2025 0.4094 MLYHFSSVDVAFEFYNTYAQKRGFAARKWNVVKNKHGQVTQKTFVCFKQGFRLKKHLMKKNRKREPRVLTWCGCPAFFRVRFLSETNRWHVKAFLDSHSHEMLGEKIVGMLCAHRKMHECDLMQLNSMRDAGIGVTQIYGLAANQSSGYDRLGFRKIDMYNEIERQRRILVSDVRAAFAYLRHLRSTDSEMFWRHPADAEGRVQHLFWTDGRSQADYKLFGDVVAFYATYRRNKYMSLFVVFAGVNHHNQTVVFGSRLIVKETEETYVWLLKQFFEAMKGKLPISVITDGDLAMKNAIRFVFPSAHHRLCAWHLLRNATTNISNPKFTSKFRRCMLGDYDVGRFRVKWDELIVEFDLHGNSWIKELYEKRKMWATTHIRGDFFAGFRTTSRCEGMHAQVGRYVHYRNNLTDFLKQFTRYLGYTRQRELEADFESIIGEPVLQTSFEDIERSAAQVYTRKVFLLFRTVLDRACGVKVVSCEETPNCLIYVMCRRSYPDCKWYVSMIPSITEFKCSCLRMESLVIPCEHIIALLRHLEIKVLPESLVMQRWTKNAKQCVEDSDENSSAVGRSKAISLLSDCYEVCRLSGKCVQKLDLSKQTIRELLQRLRDPNMQNNTDGGNDNDDGEEVHVRDPVRARTKGCGPRTTLAGGKGNRRTTCCSICQEPGHNKKTCPN. 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01956 674 MobiDBLite consensus disorder prediction 622 638 - -
Seca1g01956 674 Pfam FAR1 DNA-binding domain 13 102 IPR004330 -
Seca1g01956 674 Pfam SWIM zinc finger 512 535 IPR007527 GO:0008270
Seca1g01956 674 SMART 26again6 511 538 IPR006564 GO:0008270
Seca1g01956 674 PANTHER OS01G0519700 PROTEIN 4 564 - -
Seca1g01956 674 ProSiteProfiles Zinc finger SWIM-type profile. 501 536 IPR007527 GO:0008270
Seca1g01956 674 Pfam MULE transposase domain 224 317 IPR018289 -
Seca1g01956 674 MobiDBLite consensus disorder prediction 607 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01956 Seca-Chr1 38403833 38405857 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g01956 MULE 7.9e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01956 - - tpra:123913749 651.358