Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01954 ATGGCAACGACAGCATACCCCCCACCACCACCTTATTACAGACTTTACAAAGATTACTTGCAAGATCCTAAGTCTGCTCCGGAGCCTCCACCACCTATTGAAGGGACTTACATTTGTTTTGGAGGCAATTACACTACTAGTGACGTGCTGCCAAGCTTGGAAGAACAAGGGGTGCGCCAGCTCTATTCTAAGGGGCCTAATGTTTTTATGGATATCTTTAGTTGTATTTATGCTCAGTTTGATTTGATAATGTTATCAAGTGACCATTAG 270 0.4296 MATTAYPPPPPYYRLYKDYLQDPKSAPEPPPPIEGTYICFGGNYTTSDVLPSLEEQGVRQLYSKGPNVFMDIFSCIYAQFDLIMLSSDH. 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01954 89 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7 2 68 IPR009244 GO:0003712|GO:0006357|GO:0016592
Seca1g01954 89 Pfam MED7 protein 4 64 IPR009244 GO:0003712|GO:0006357|GO:0016592
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01954 Seca-Chr1 38399483 38399899 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED7 Seca1g01954 Med7 5.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01954 K15148 - cave:132192188 122.094