Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01936 ATGTCTCCACCAGGTTCATCAAGATGGAGCCCTACAACTGAGCAGCTCATGATCTTGGAGGAACTTTACAGGAGTGGAATTAGAACTCCTAGTGCTTCTCAAATTCAGCAAATAACAACTCACCTTTCTTTCTATGGAAGGATAGAAGGCAAAAATGTGTTCTATTGGTTTCAGAACCATAAGGCTAGGGACAGGCAAAAGCTCAGGAGGAAACTTAACAAGCAACTGCAGCTACAGCAACAACTCCAAGTTTATCATTGCCAACTCAATCAGGATATCAATAACCATTTTGTTGGTAGCTTTGGTTATCCTCCTGGATCTAGTACAAAAGAAATTTCCTTTTTTAACTCAGCTAGCTTGCTTTTTCAGGGAGGAGATGCAAACACAACAGAAGGTGCAATCAATTGCAAATGGAATGCTTATAATCCACAAAGTTTGATGGAGAAGAAAGAGATTGCATTCTGCAACTATGGTTGGAGTACACTTATGGATGTTAATCAAGCTTCTTCATGTTGCACTAGACCTCTCAAGACTCTTGATCTCTTTCCAATCACAACTACCAGAATCAAAGAAGACTGCACCACATCACCTAACAGTACCTCTATCTTTCCATGTTCTTCAACTAAAACCCAAAACTACTACTCTAAGTGA 651 0.3978 MSPPGSSRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQKLRRKLNKQLQLQQQLQVYHCQLNQDINNHFVGSFGYPPGSSTKEISFFNSASLLFQGGDANTTEGAINCKWNAYNPQSLMEKKEIAFCNYGWSTLMDVNQASSCCTRPLKTLDLFPITTTRIKEDCTTSPNSTSIFPCSSTKTQNYYSK. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01936 216 Gene3D - 2 67 - -
Seca1g01936 216 FunFam WUSCHEL-related homeobox 4 6 73 - -
Seca1g01936 216 Pfam Homeodomain 7 66 IPR001356 GO:0003677
Seca1g01936 216 SUPERFAMILY Homeodomain-like 5 69 IPR009057 -
Seca1g01936 216 CDD homeodomain 8 67 IPR001356 GO:0003677
Seca1g01936 216 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 2 202 IPR044555 GO:0003700|GO:0099402
Seca1g01936 216 SMART HOX_1 4 71 IPR001356 GO:0003677
Seca1g01936 216 ProSiteProfiles 'Homeobox' domain profile. 2 67 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01936 Seca-Chr1 37965760 37967145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01936 1 74 Wox Gene Family AT2G28610 83.784 1.10e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca1g01936 Homeodomain 7.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01936 - - gmx:102663963 281.182