Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01935 ATGATGAAGAAATTTAAGAATGCTATCGTGGAGGGTGGGGTTTACACCATGATCAATTTTGGTGTCATAAGGAGTGTTGGTAATTACCGTGCAGCAAAACATGAATATAAGTTGTTGTTTAGTGGAAAGACACGACTATTTCCGGCTCAGACTGAGTTGATCCCTCTTAATGGACTTTCCCTTGTGAATACGGAGGATGTGTTCAAGACTAATGGGGATTCCAACTATCTCATAGACTTGGTGGGACTTCTCACAGCTGTTTCTGGTGAGAAAGAACTCATAACGGAAGGCAGGAAGACAAGGATGATACAACTTGAACTGACTGACGAGAAGGGTAAGCTACAGTGCACTGTGTTTGGTGATTATGTTGATGCTGTAAAGGAACATCTATCAGCTGGTATTAGCCCTCTGCCTGTTTTGGTGGTCCAGTTTTTTAAAGTCAGGCTTTACAAGGGATGTGTTGTGATCCAGAACGTTAACAACACTTCTAGAATTCTATGGAATGCGGAGATTACAGAAGTGAATGACTTTAGGAGTCGGCTTGCAAGCAATGGAATTGATCCTACTATTCCTATGGGAGATTTACTGGTGGGTAGTCCAATTATCCCACTTGCTGATGATTTTCTGAAACTTTATCCGAGGAAGACTCCAGAACAACTCCAATTGACAGAGGAGGATGGAACATTTATTGTACTAGCCACTATCATTGGAATTATTAAGGATGAGCAGTGGTGGTATGGAGCTTGCAAGTGTCACAAGGCTGTGACCCCTGATGGAGGTCTATACTATTGCTCAAATTGCTGCACTCACGTGCTGGAAGTTACTCCAAGGTTTAAGGTGAAGGTGGAGGTATGTCATTGGGATGAAAGTGTTGTATTTGTTCTATGTAACTCTGATGTAGCTCAATTGTTAGGCAAGCCGTGTAAGGAGTTACTTGCGGAGGCAAAGGTTGAGAAGGGTCCTGGATATGCATTTAGTTATGATGACTCATTCAAAGTAAAGAAAGTATGTGATGATTCTCAAATAATTACCAAATTCAAGGACATGTGGGGAATAACAACTCCTAGGAAGCTGAAGTTTGATCCTCCTTTTCCTACTACGGTTGAAGGTGACAATCTGCAATGTGCATGTGAAACCTCAGCAGAAGATTTTGAGGTGTTGGTTGATACCCGTGTGGCATCTGACCCAGCTTTTGAGGCTTCGTCAAGCTCAGGTGCTCAGGCTCAGGACCCAAACTGTGAGCTTACCCCTAATGGAGATGGCGATGGGGCTAGCCCTGTGCTAAAAAAATGA 1293 0.43 MMKKFKNAIVEGGVYTMINFGVIRSVGNYRAAKHEYKLLFSGKTRLFPAQTELIPLNGLSLVNTEDVFKTNGDSNYLIDLVGLLTAVSGEKELITEGRKTRMIQLELTDEKGKLQCTVFGDYVDAVKEHLSAGISPLPVLVVQFFKVRLYKGCVVIQNVNNTSRILWNAEITEVNDFRSRLASNGIDPTIPMGDLLVGSPIIPLADDFLKLYPRKTPEQLQLTEEDGTFIVLATIIGIIKDEQWWYGACKCHKAVTPDGGLYYCSNCCTHVLEVTPRFKVKVEVCHWDESVVFVLCNSDVAQLLGKPCKELLAEAKVEKGPGYAFSYDDSFKVKKVCDDSQIITKFKDMWGITTPRKLKFDPPFPTTVEGDNLQCACETSAEDFEVLVDTRVASDPAFEASSSSGAQAQDPNCELTPNGDGDGASPVLKK. 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01935 430 CDD RPA1_DBD_B_like 79 181 - -
Seca1g01935 430 Gene3D - 210 346 IPR012340 -
Seca1g01935 430 Gene3D - 54 188 IPR012340 -
Seca1g01935 430 SUPERFAMILY Nucleic acid-binding proteins 218 316 IPR012340 -
Seca1g01935 430 Gene3D - 1 48 IPR012340 -
Seca1g01935 430 SUPERFAMILY Nucleic acid-binding proteins 60 186 IPR012340 -
Seca1g01935 430 Pfam Domain of unknown function DUF223 2 76 IPR003871 -
Seca1g01935 430 MobiDBLite consensus disorder prediction 398 414 - -
Seca1g01935 430 MobiDBLite consensus disorder prediction 398 430 - -
Seca1g01935 430 Pfam Replication factor-A C terminal domain 231 316 IPR013955 -
Seca1g01935 430 CDD RPA1_DBD_C 218 314 IPR047192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01935 Seca-Chr1 37926615 37928870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01935 77 311 Core DNA Replication Machinery Family AT5G61000 25.591 2.77e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01935 - - lja:Lj1g3v3385890.1 338.961