Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01934 ATGATTGCTTCGGATATGCCATTTTCAACTGTGCCATACTCCTTCTCTCCTGTGACTGCTGATGATATAACAAAGAAAGGGGAACAATTTGATTATATGATAGATTTTGTTGGAGTGTTAACATCAATGTCTGCTGAGAAACACAACGTGCTGTTTGGTGTTATGAAGAGATCTATCTTCCTTGAAATCCATGACCACACGGGAAAGATTCAATGTGTCCTTTATGATGAGTACGTTGATTTGGTTCAAAATCATGTTAAGGTTCACGGTCGAGCAAGTCCTATTATAGTGATTCAGTTTGCTAAGCTAAGTCCAGTTGGAGGTGTCTTTTTTGGGGCATCTAACATACAGAACATGTTCAGTGCAACAAGGGTGTTGTTTAACCCTGTGCTTCCAGAGGTTGTTGAATTTAGGAGGAGTACTGCCTTGCTTGGCATTGAGCTGGAGGGGCGAATTGGATTTATGAAAAGGATAACATCTTATGTATCAGTTAAAGATGATTTCCTTAATTTGCATCCACCAAAGAAAATTATTGAGCTTCGTAGTTCCCGACAGACTGGATTCTTTATTGTGTGTTGGAAGGTTGTCAAGATTGTGAATGATAGTAGGTGGTGGTTTCTAGAATGTAAATGCCGAAATCCAGTGATTCATAATGAAGGGATTTATTTTTGCTCTGAATGTCGTAGGAACGTTGTGACTATTATTCCCCGTTACCGGCTTAAGATTGAGGTCTATGATTCAAGTGACAGTACCCATGTCATTTTGGATGATTCTGATGCTGAACGTTTGTTGAAAAAGTCCTGCAAATCTCTCATGGATGAAATTGAAGATCCATTAGCTAAGACTCTGCCCCCACTATTTCACTGTCTCATTGGGAAGCAAGTTCTTTTCAAAATCCACAAATTTGTAGCTCTTGATGGCGTTGGTCAGGATAATTTTAAGATTATCAGAATATGTGATGATGTGGATGTCATTTCCTATTTTTTAAGGGTTGAGCCCTTTATAATACCCAAGCAAGTTGAGGGGGCGCGTGAAATTGATTTTATTTCTTTGGTTCGTGGTGTGAAGGAAGAAACCTGCACTGGCAGTTCTCGAGTTTGTCCTGGTATCAAAAGTCAACTTCGTGCATGTACTACTTCCAAAACACTTGATCCTGCACCTCATACTGACATTAGAAGAGTTACCAAAAGGTTGGAGATTGAGTTCCAGAAAGCACGCAATGCTGGAAAGTGTGTTATTTTCGATACAATGGAAGAATAA 1260 0.3944 MIASDMPFSTVPYSFSPVTADDITKKGEQFDYMIDFVGVLTSMSAEKHNVLFGVMKRSIFLEIHDHTGKIQCVLYDEYVDLVQNHVKVHGRASPIIVIQFAKLSPVGGVFFGASNIQNMFSATRVLFNPVLPEVVEFRRSTALLGIELEGRIGFMKRITSYVSVKDDFLNLHPPKKIIELRSSRQTGFFIVCWKVVKIVNDSRWWFLECKCRNPVIHNEGIYFCSECRRNVVTIIPRYRLKIEVYDSSDSTHVILDDSDAERLLKKSCKSLMDEIEDPLAKTLPPLFHCLIGKQVLFKIHKFVALDGVGQDNFKIIRICDDVDVISYFLRVEPFIIPKQVEGAREIDFISLVRGVKEETCTGSSRVCPGIKSQLRACTTSKTLDPAPHTDIRRVTKRLEIEFQKARNAGKCVIFDTMEE. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01934 419 CDD RPA1_DBD_C 188 335 IPR047192 -
Seca1g01934 419 SUPERFAMILY Nucleic acid-binding proteins 15 142 IPR012340 -
Seca1g01934 419 Gene3D - 170 319 IPR012340 -
Seca1g01934 419 SUPERFAMILY Nucleic acid-binding proteins 183 300 IPR012340 -
Seca1g01934 419 CDD RPA1_DBD_B_like 35 140 - -
Seca1g01934 419 Gene3D - 13 143 IPR012340 -
Seca1g01934 419 Pfam Replication factor-A C terminal domain 192 276 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01934 Seca-Chr1 37920314 37924864 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01934 3 273 Core DNA Replication Machinery Family AT5G08020 24.150 8.17e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01934 - - lja:Lj1g3v3385890.1 226.868