Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01930 ATGCCTTTGTCTCCCTCCACCTCCATAACCAACCTTCGCCTTCGCACTCTCGTCTTCTTCAGAAAATGGACCACCAAAGACTATGCCATCGCCGCATTCGCCATCCTCATCCTCTTCTCCCTCCTCCTCTCCTCCCAATTGAATTCCCATCCTCACTCTCACTCTCACTCCCTCCTCATTCCCTTCACTCCTCTCCGTAACGCCAACCAAAGAGGAGCACTTTGCTTGGACGGGAGTGCCCCCGGCTACCATTTCCAAAAGGGATTCGGATCTGGATCTCGCAATTGGTTGCTCCACGTCGAGGGAGGAGGGTGGTGTAATTCGATATCTTCGTGTTCTCGCCGAAAATTTACCGCTTTGGGTTCATCCAAGTATATGGAGACACTGGTTCCTTTTTCAGGAATTTTAAGCTCTGACCCCTCTCAAAATCCTGATTTCTTTAACTGGAACAAGGTGAAGATACGGTATTGTGATGGTGCATCTTTTGCTGGTCACCCAGAGAGTGAGCAGAAAGGGAGTGGGTTATTCTTCAGAGGCCAGATCATATGGGAAGCTATTATGGGTGAACTCTTATCAATTGGCATGTCTAAAGCAAAACAGGCTCTGCTTTCAGGATGCTCCGCTGGAGGGTTGGCAACTCTTATACATTGTGATGATTTCCGACAGTTACTTCCAAAGGAGGCCACTGTCAAGTGTCTTGCTGATGCAGGCTTCTTCCTAGATGAGAAGGATATTCTCGGAAATAGCACAATGAGATCTTTCTATCACGATGTTGTCCAGCTTCAGGGTGTTGCAAAAAGTCTGCGCAAAGAATGCCTTGATAAAATGGAACCGTCTAAGTGTCTCTTTCCATCACAAATTCTTAGAAGCATAAAGACTCCCGTGTTCCTTGTTCACCCAGCTTATGATTTCTGGCAGATACACAATATTTTGGTACCTGAAGGATCAGATCCCCATGGTCACTGGAAAAGCTGCAGATTGAACATTCACAATTGTAATGCTAACCTGATTGATATACTTGACCGTTTCCGTAGTTCTTTGCTGAAGGCTGTGAATGAATTCCAGCAACGAAAGGAGATTGGAATGTTTATAGATTCCTGCTTTATCCATTGCCAGACTTGGATGGGAGAGACATGGCATTCACCCAATTCACCTAAAATAAACGACAAGACAATTGCTGAATCTGTTGCTGATTGGTTCTTTAACCGAGATGTAGTAAAGCTGATTGACTGCCCTTATCCATGCAATCCTACTTGCCATAATATGGATTTCACAAGAGTATGA 1284 0.4517 MPLSPSTSITNLRLRTLVFFRKWTTKDYAIAAFAILILFSLLLSSQLNSHPHSHSHSLLIPFTPLRNANQRGALCLDGSAPGYHFQKGFGSGSRNWLLHVEGGGWCNSISSCSRRKFTALGSSKYMETLVPFSGILSSDPSQNPDFFNWNKVKIRYCDGASFAGHPESEQKGSGLFFRGQIIWEAIMGELLSIGMSKAKQALLSGCSAGGLATLIHCDDFRQLLPKEATVKCLADAGFFLDEKDILGNSTMRSFYHDVVQLQGVAKSLRKECLDKMEPSKCLFPSQILRSIKTPVFLVHPAYDFWQIHNILVPEGSDPHGHWKSCRLNIHNCNANLIDILDRFRSSLLKAVNEFQQRKEIGMFIDSCFIHCQTWMGETWHSPNSPKINDKTIAESVADWFFNRDVVKLIDCPYPCNPTCHNMDFTRV. 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01930 427 PANTHER NOTUM-RELATED 41 422 IPR004963 GO:0016787
Seca1g01930 427 Pfam Pectinacetylesterase 55 404 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01930 Seca-Chr1 37823131 37830611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01930 13 391 Carbohydrate Esterase AT3G09410 58.869 5.24e-168 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01930 K19882 - gmx:100792819 670.233