Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01929 ATGGGTAACAGAATCGGAAATCTCTGCCTCTGCTCCGCCGGCGCCGGAGACAACTCCGGCAGGTTAGACAACAACATTGCTTTCCTCTCTAAGCAATATGACAAAGCTATTGGAAACTCCATCTGCTATGTCAGACCAGACCCATGTCAGTTTTCCGGCGAAGGTTTTACCTTTTCCGATGATGATATCACCCTGATGACTTTCCGGTCAGTTTCCGGCGCCACCGTGAGTGCAAACTCGTCAGCAACACCTTCCACTTCCCTTGATGACTCTCTTCAACACAGCATCGTTTTGGATTCCTCTGCTTCGTTTGAGAGCTCTGGTTCCTTCACTTCCACGATGGTGCCTCTGCAACTGCAGCATCAACATGCTCCTCGTGGCTTCTCTGTGGGTAGCATCGTGGAAAAAGGGTTATCTTGGGGTCCTAACGTAGGTGGCTTTGTGCAAAGTCCTTGTGATCGTGTGTTGAATGGTTCTGAACCTGTGAAGAACATAAGGAGAAGCTTGTCTCATAGTGGATATGAGTTTGAGAACAAACACAGTAAGCTCAGCTTGAAGAAGGTTCTGAGTAGAGCTTTTTTAAGCACATTATCTCTTGGGAAAAAGTCCATTCTCAAGAAAAAGGATAATGGTAATGCCAGAGTGAGTTGTAGTACTAGCTTGAGTGATGAATTGAGACTGCATGGTGTTGAGGGTGATAATAATAACTATTTGGATGATGATGGTGGTTGTGGTTTGTTAATGGGGTGTCAGAATCTTCATTGGGCTCAAGGTAAAGCTGGTGAGGATCGTGTGCATATTGTGATTTGTGAGAATCATGGATGGATTTTTGTAGGGATTTATGATGGGTTTAATGGCCCTGATGCCACTGATTATCTTCTTAATAATCTGTTTTATGCTGTACATGATGAGCTCAAGGAGATACTGTGTAGTCACAAGTCTGAATCCATGGAGAAAGCGTGGTTATCAGTTAAGGGAAATGGGGTGGTTGATAAAGAAAACTATCCAATAGTAAATGAAAAGTCAAATTTGGACTGTGTATCAAAGAGAGTAGTGGGAATGAATAGGAGGAATAGTGATAATAAAGAGGTTAGAATGATGTGGGAATGTGAAGGGGAAGGTGAAAAAATGGACCTTGAAAAGAGGGTGGAGGTAAACTTGAGTCTTGCACAAGAAGAAAGTGAAGCAGATTTTAGCCACTCAGATGTGTTAAAAGCTCTTTCAGAGGCATTGAGGAAGACTGAGGATGCATTTTTGAAGACTTCTGATGAGATGATTACTCTTAATCCTGTGTTAGCTATGATGGGTTCTTGTGTTTTGGTAATGATGATGAAGGGAGAAGATGTTTACTTGATGAATGTGGGAGATAGCCGTGCTGTCCTAGCAACACAGACTGGGAATTCCCTTCAGCTCACCATGGAGCATAGCACTCATGTGAAAGAGGAGGTTTATAGAATCAGGAAGGAGCACCCAGATGACCCTTCTGCAGTAACTAAAGGCCGGGTGAAAGGTTACTTAAGTGTCACAAGGGCTTTTGGGGCTGGGTTCCTTAAGCAGCCTAAACAGAACAATGCAGTGTTAGAGACTTTCAAAGTAAGCTACATAGGGGAATCCCCATATATCACTTGTTCCCCTTCACTCCACCACCACAGGCTCAGCCCAAATAACAAATTTCTGATACTATCTTCTGATGGACTTTACCAATACTTCACCAATGAAGAAGCAGTTGCCAAAGTAGAGACATTTATCACTATGTTTCCAGATAGAGATCCTGCACAACTTCTCATTGAAGAAGCACTAACTAGAGCAGCCAAAAAAGCTGGTATGGAGTTCCATGAGCTACTTGAAATCCCACAAGGGGAAAGGCGTCTTTACCATGATGACATTTCTATTGTCATAATCTCCTTGGAGGGAAAAATATGGCGTTCATTTGTGTAA 1938 0.4303 MGNRIGNLCLCSAGAGDNSGRLDNNIAFLSKQYDKAIGNSICYVRPDPCQFSGEGFTFSDDDITLMTFRSVSGATVSANSSATPSTSLDDSLQHSIVLDSSASFESSGSFTSTMVPLQLQHQHAPRGFSVGSIVEKGLSWGPNVGGFVQSPCDRVLNGSEPVKNIRRSLSHSGYEFENKHSKLSLKKVLSRAFLSTLSLGKKSILKKKDNGNARVSCSTSLSDELRLHGVEGDNNNYLDDDGGCGLLMGCQNLHWAQGKAGEDRVHIVICENHGWIFVGIYDGFNGPDATDYLLNNLFYAVHDELKEILCSHKSESMEKAWLSVKGNGVVDKENYPIVNEKSNLDCVSKRVVGMNRRNSDNKEVRMMWECEGEGEKMDLEKRVEVNLSLAQEESEADFSHSDVLKALSEALRKTEDAFLKTSDEMITLNPVLAMMGSCVLVMMMKGEDVYLMNVGDSRAVLATQTGNSLQLTMEHSTHVKEEVYRIRKEHPDDPSAVTKGRVKGYLSVTRAFGAGFLKQPKQNNAVLETFKVSYIGESPYITCSPSLHHHRLSPNNKFLILSSDGLYQYFTNEEAVAKVETFITMFPDRDPAQLLIEEALTRAAKKAGMEFHELLEIPQGERRLYHDDISIVIISLEGKIWRSFV. 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01929 645 CDD PP2Cc 259 636 IPR001932 -
Seca1g01929 645 ProSiteProfiles PPM-type phosphatase domain profile. 245 636 IPR001932 -
Seca1g01929 645 PANTHER PROTEIN PHOSPHATASE 2C 210 634 IPR015655 GO:0004722|GO:0006470
Seca1g01929 645 Pfam Protein phosphatase 2C 358 605 IPR001932 -
Seca1g01929 645 SUPERFAMILY PP2C-like 258 637 IPR036457 -
Seca1g01929 645 SMART PP2C_4 246 634 IPR001932 -
Seca1g01929 645 Gene3D - 236 642 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01929 Seca-Chr1 37681055 37683805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01929 1 645 PP2C-type Phosphatase Gene Family AT1G07630 46.307 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01929 - K01102 gmx:100804061 809.675