Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01924 ATGGAAGAAAAACTAGCAAGAACAACTGAAGGACAACCCATAAGATGTAAAGTTGCTGTTTGTCGCAAACCAGGTGAGCCATTGACTATTGAGGAGATCATTGTGGCACCACCAATGCCTCATGAAGCTCGGATTCGAATTATATGCACCTCTCTTTGTCACAGTGATATCATTTTCTGGAAGATGGAGGAACCCCCTGCAATCTGTCCAAGAATTCTGGGTCATGAGGCAATTGGGGTTGTGGAAAGTGTAGGAGAGGGTGTAACTGAAGTTACAAAAGGAGATATGGTTATCCCAATTTTCATTGCTGATTGTGGGGAGTGTATAGATTGCAAATCAACCAAGAGTAACCTTTGTTCAAAGTTTCCTTTCAAGTACACTGTGGTTGACATTGCCAATCTAACCAAGATTGATCCAGCAATTCCTCCAAACAAGGCATGCCTCCTCAGTTGTGGTGTATCAACAGGGGTAGGTGCTGCTTGGAGAACAGCAGGTGTGGAGCCAGGATCTACAGTAGCTATTTTTGGACTTGGATGCATTGGATTAGCAGTTGCTGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATAGGTGTAGATGTCAACCCAGAAAAATCTGAACTTGGAAAAAAGTTTGGACTCACTGACTTTGTTCATGCTGGAGAATGTGTAAACAAATCTGTGAGCCAGGTTATCATAGAGATGACTGGTGGGGGAGCAGATTATTGCTTTGAATGTGTTGGTATGGCATCATTGGTGCAAGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGAAAAACAATTGTTTTAGGAGTGGACAAGCCAGAGGCCAACTTGAACCTTAGCTGTAGTGAGGAGCTGAAGTTGGATGAGTTTGTCACACACGAGGTAGAGTTTAACGACATCAATAAAGCTTTTGATTTATTGGTTAAAGGACAGAGTCTTCGATGTGTGATTTGGATGGACAAATGA 972 0.428 MEEKLARTTEGQPIRCKVAVCRKPGEPLTIEEIIVAPPMPHEARIRIICTSLCHSDIIFWKMEEPPAICPRILGHEAIGVVESVGEGVTEVTKGDMVIPIFIADCGECIDCKSTKSNLCSKFPFKYTVVDIANLTKIDPAIPPNKACLLSCGVSTGVGAAWRTAGVEPGSTVAIFGLGCIGLAVAEGARLCGATRIIGVDVNPEKSELGKKFGLTDFVHAGECVNKSVSQVIIEMTGGGADYCFECVGMASLVQEAYASCRKGWGKTIVLGVDKPEANLNLSCSEELKLDEFVTHEVEFNDINKAFDLLVKGQSLRCVIWMDK. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01924 323 FunFam S-(hydroxymethyl)glutathione dehydrogenase 156 288 - -
Seca1g01924 323 Pfam Zinc-binding dehydrogenase 180 280 IPR013149 -
Seca1g01924 323 Pfam Alcohol dehydrogenase GroES-like domain 40 121 IPR013154 -
Seca1g01924 323 PANTHER ALCOHOL DEHYDROGENASE 284 319 - -
Seca1g01924 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 141 282 IPR036291 -
Seca1g01924 323 SUPERFAMILY GroES-like 270 320 IPR011032 -
Seca1g01924 323 SUPERFAMILY GroES-like 9 162 IPR011032 -
Seca1g01924 323 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Seca1g01924 323 Gene3D - 156 282 - -
Seca1g01924 323 Gene3D - 19 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01924 Seca-Chr1 37568584 37572614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01924 42 129 Monolignol Biosynthesis Gene Families AT4G37970 32.584 1.75e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01924 K00121 - gmx:100806887 547.354