Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01923 ATGGAAAACATTAATGAAAACATTGGTGAGAATGTTGTTGGGTTGGAAGAAATTGAAAGTGAAGATGATGGTGACAATGCATTTCATTACGACTCTCGTGAATTTGTAATTGGGGTGGATTCTGAGGCTGATTTTGTTGACCTTAATCCTGACTTGTTAACTGAGGAAAACTTGAGGAATTTTAATTTTCCTAATTTGGATGTTGCTTATTTATTTTATAATAATTGGTATGGAAAAATGAAGGGTTTTTCAGCACGAAAGGGCAAAGAACGTAAAAATGCAATGGAAGAAATTATTGAGAAGACGTATCTATGCCATAGGGAAGGAAAGAGACCAATTAATACGAATGAAAAGACGGGGAAGAAAAAACGTGAAGCAAAGCCTGAGACAAGGTGTTTATGTCCTGCAAAAATGAAGGTTCGGTTAGATGTACATTCTGGCCGTTGGAACGTGACCAAGTTTTGTGATGCCCACAATCATGAAATGCTAAACCCCAAATACACAGGGATGCTACCGGCTCATAAGAAATTGAGTGAAGCTGATATCTTGGAGATGAATAACATGCGGAATGCAGGTATTACTACACCTCAAATTTATGGCTCATTTGCCAGCCAATCTGGTGGGTACAACAATGTTGGTTTTCGGAAAAGAGATCTTTACAATGAGATTGGTAGGCAAAGAATGATGCAGCTAAGTGATGCTAAGGGTGCAATTAAGTACCTACGTGAAAGGGAGCAGAATGAAGAGTCAATGTTTTGCAGGCACACGACTGACTCTGAAGGCCGACTCCAGCGATTATTTTGGTGTGACGGTCAGTGCCAAGTTGATTACAAATTATTTGGTGATGTCCTTGCCTTTGATGCCACATACCGTAAGAACAAATATCATTTTCCTTTGTTGATGGTGGCAATGAAAGGCAAGATGCCTTCAGCAGTGATAACATATGGTGATCTTGCTATGCGGAATGCTATCAAAAGAGTGCTTCCTAATGCGCATCATAGACTTTGTGTATGGCACCTGTGTCGTAATGCTGCCAGTAATGTTAAAAATCCTAAGATGGTTTCGATGTTTAGGAAATGTATGTTGGGTGACTATGAGGTGTCTGAGTTTAAACACAGGTGGGAGGTAATGGTGAAGGAATTTCGACTTGAGGAAAACAATTGGGTGAAGGAAATGTATGAGAAAAAGAGGATGTGGGCCACAACATACATAAGGGGAAATTTCTTTGCAGGGTTTAGGACAACGTCTAGATGCGAGGGGCTGCATGGGCAAGTTGGAAAGTTTGTTCACTCCCGGACTGATTTGGTTGGATTTCTGAAAAATTATGGTCGTTTCCTTGAAGTACTAAGGTATAATGAGTTAGAAGCTGATTTTGAGTCAGTACGTGGTGATATGGTCCTGGAGACTAACTTGCATGCACTAGAGAGATCAGCCTCTAAGATTTTCACAAAGGAGGTTTTCATATTGGTACGTCCCACCCTTGCCAGGGGAAGCACTATGAGGGTCATGGGCTGTACACAGCTGATGTCACAAACCATTTTTACAGTGTCCAAGTATGGTAGATCACAGAAGGAGTGGCAAGTGTCATATATTCCAGAACCACTTTTCCTTAAATGTTCTTGTCAAAGAATGGAATCTTTTGGACTTCCATGTGATCATATAATCGGTGTGATGGTACACTTGAACATACAAGAGATGCCGAAGTGTCTTGTGCTGAGTAGGTGGACCATGGGTGTGAAGGATAGTGCTTATGAAATTAGGGATGGACGCAACTCGATTTGGGATTCTGTGTTCGATGCACGTTGTGGTTATTTGGACTTTTTGTGTAAGAAGATGAATAGATTGGGGGGTAGATCTGCTACAAGATTCAACGAGATTAAGGACTGGGTTAGCAGTAAAATAAACTTGTATAGTGAAGCACATATGACTAGTGGTGATGGGAATGAAAATGCTACAGATGAAGGTGGTCCAACATTGAAAGATCCGATTAGAGTTGGTCCAAAGGGGTGTGCAGTTGGTTCATCGTCACAAGAAAGAAGACGACCCCATAAATGTAGGCAATGTGGTGTTGCTGGTCACAATCGAACTACTTGCCCAAATAAAAGGAAATATGAGGTGTCTATTGAGTCGGGAGAGTGTGAAGGTACTCTTCAGGGCTGGATAAAGTTGGAGCAGCCCGTGTGGATAGCATGA 2193 0.4131 MENINENIGENVVGLEEIESEDDGDNAFHYDSREFVIGVDSEADFVDLNPDLLTEENLRNFNFPNLDVAYLFYNNWYGKMKGFSARKGKERKNAMEEIIEKTYLCHREGKRPINTNEKTGKKKREAKPETRCLCPAKMKVRLDVHSGRWNVTKFCDAHNHEMLNPKYTGMLPAHKKLSEADILEMNNMRNAGITTPQIYGSFASQSGGYNNVGFRKRDLYNEIGRQRMMQLSDAKGAIKYLREREQNEESMFCRHTTDSEGRLQRLFWCDGQCQVDYKLFGDVLAFDATYRKNKYHFPLLMVAMKGKMPSAVITYGDLAMRNAIKRVLPNAHHRLCVWHLCRNAASNVKNPKMVSMFRKCMLGDYEVSEFKHRWEVMVKEFRLEENNWVKEMYEKKRMWATTYIRGNFFAGFRTTSRCEGLHGQVGKFVHSRTDLVGFLKNYGRFLEVLRYNELEADFESVRGDMVLETNLHALERSASKIFTKEVFILVRPTLARGSTMRVMGCTQLMSQTIFTVSKYGRSQKEWQVSYIPEPLFLKCSCQRMESFGLPCDHIIGVMVHLNIQEMPKCLVLSRWTMGVKDSAYEIRDGRNSIWDSVFDARCGYLDFLCKKMNRLGGRSATRFNEIKDWVSSKINLYSEAHMTSGDGNENATDEGGPTLKDPIRVGPKGCAVGSSSQERRRPHKCRQCGVAGHNRTTCPNKRKYEVSIESGECEGTLQGWIKLEQPVWIA. 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01923 730 SMART 26again6 537 564 IPR006564 GO:0008270
Seca1g01923 730 PANTHER OS01G0519700 PROTEIN 55 596 - -
Seca1g01923 730 Pfam FAR1 DNA-binding domain 72 163 IPR004330 -
Seca1g01923 730 Pfam SWIM zinc finger 529 562 IPR007527 GO:0008270
Seca1g01923 730 ProSiteProfiles Zinc finger SWIM-type profile. 514 562 IPR007527 GO:0008270
Seca1g01923 730 Pfam MULE transposase domain 304 343 IPR018289 -
Seca1g01923 730 MobiDBLite consensus disorder prediction 643 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01923 Seca-Chr1 37550304 37552862 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g01923 FAR1 1.2e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01923 - - tpra:123913749 633.254