Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01919 ATGGGTGAGGAAGGTGAATTTTTTGGTTATGATGAAAAAGAAGATATTGTTGTATCTCATGATGAGCCTAGTAGGTTGCTTGACTTGTCTGGGGAAGAAATAATGTCCCTTGAATTTGGCAGTGAAGAAGAGGCATATAATTTTTATCAATTATATGCTAAGTTTCATGGCTTTGTGGTTAGAAAAGATGACGTAACGAAGGATATTAGGGGTAATTTAATTATGCGGCAGTTTGTTTGCAATAGGGAGGGACTAAGAAAAAAGAAGCACTTTATGAGGCTTCGTATACACTACCATGTGAAGAGTTTAAAGTGGAAAGTGGTGTCATTTGAGCAATGTCATAACCATGAGCTTACCCCTTCTAGATTTGTGCACCTACACCCTGCTTACCGGGGTTTAACGGATGCTGATAAGGCTCAGGTTGATAGTTTGCATACATATGGTCTTAGAGGTTGTCATATTATGGGGTACCTAGTGGCTCAAAAGGGTTCTTATTGTCGTGTTGGTTTTACGAAGAAGGATATGTACAACTATCTTGACCGAAAAAATCAAGCAAAGGTGAAGAAAGGGGACGTACGTGCTGGCTTGAGTTACCTTCAAGGCAAGGCTGACAGTGACCCACTTTTATATGGGAAATACTCTACTGGATCTGATGGTAAATTAAAACGCCTTTTTTGGGCTGATGGAGTAAGTAGGTATGATTTTCATTGCTTTGGTGATGTTCTTGCGTTTGACACGACATACAAGAAGAACAAGTACAATTATCCTGTTGTAATTTTTTCTGGCTGCAATCATCATTCGCAAACAATTATTTTTGGCTGTGCTTTAGTCTCAGATGAAACAACTGAAACCTATAAGTGGGTTTTAGAAGCTTTCTTGGAAGCAATGGGTAACAAGCAGCCGAATGCAGTAGTAACAGATGGTGATAGTGCAATGCGGGAGGCTATTAAGCATGTTTTTCCAGAATCATGCCATCGCTTGTGTGCATGGCACTTGCATAATAATGCTTGTGAGAATGTCAAATGTTCTCCGTTTTTGGAAGATTTCAAGAGAGCAATGTACTCGAATTTCACCCCGGATGAATTTGAGGAGTTTTGGAAAAAGAAGGTGGTTGAACATGGTCTTGTAGGGAATAAATGGGTGACCAAAACATATGAAAATAAGGGACTGTGGGCGACTGCATATCTTAGGGATAAGTTCTTTGGTCGTATAAGGACAACATCTCAATGTGAATCCATTAATTCTTTTATTAGGTCATATTGTAAGAGGAAAAGTAGTATGGTTGAATATTTGCACAAATTTGAGCAGGCAAAGAAGGAGTACAGAAATAATGAGATGATGGCTGAATTTAGGTCTTTATTTTCGGAGCCAGTGCTAACTACATATCTTCGTAGCATTGAGAAAGAGGCTTCAAAAATCTACACTCAAGAGATTTTCAAAGAATTTAAGCAAGAAATTGAAAAGGCCAATGCATTGATTGTTTGTGAAAGATCAGTGTTGGAGGAGAATGTGATGTTCACTCTTAAAAAGTTCTGCACTCCTGGTAAAGTTGTTCATGTTATGTTTTATACTGCAAACACAAGTTTTATGTGTGACTGTAGGCATTTTGAATCTAGAGGTATTCCATGTTCCCATATTATATCTGTCATGAGAAGTGAGGATATTGATCATATTCCTAATAATTTGATATGCAAACGATGGTTGAAGAATGCTAAGATTGATTTCATGTCCCATTATCAACATGATGAAATGGATTCTGATGTGATGGAAGAAGCTTGTTTTGCTGCAGTAAGTTCTGCTTGTAACAATTTTGCAAAGGTAGCATCAAAAAAGAGAAATTACTTAAAAGAGATATTGGAAGACATTCGCCAGCTAACTATAAAGTATGAAAAGTTAGGGGATAAGGTTTGCACAGATGGTAACCCATCAGCTGAGCATGTTGGCGATCCCAATAGTGTGAAAACCAAAGGTGCACCTAGGAAGAAAAAGGACAACAGGAAGAGGAGAAGGCATTGTTCTAACTGTGGTAGCACAGGACACACAATAAGGAGATGCCCATTAAGATATGGCACAGATCAGAATAGTAAAAGGGATGAAAAACTAGAAAAATCAGAAAGCGGTGCAAATGATAGTGTAAGTGTTTAA 2145 0.3809 MGEEGEFFGYDEKEDIVVSHDEPSRLLDLSGEEIMSLEFGSEEEAYNFYQLYAKFHGFVVRKDDVTKDIRGNLIMRQFVCNREGLRKKKHFMRLRIHYHVKSLKWKVVSFEQCHNHELTPSRFVHLHPAYRGLTDADKAQVDSLHTYGLRGCHIMGYLVAQKGSYCRVGFTKKDMYNYLDRKNQAKVKKGDVRAGLSYLQGKADSDPLLYGKYSTGSDGKLKRLFWADGVSRYDFHCFGDVLAFDTTYKKNKYNYPVVIFSGCNHHSQTIIFGCALVSDETTETYKWVLEAFLEAMGNKQPNAVVTDGDSAMREAIKHVFPESCHRLCAWHLHNNACENVKCSPFLEDFKRAMYSNFTPDEFEEFWKKKVVEHGLVGNKWVTKTYENKGLWATAYLRDKFFGRIRTTSQCESINSFIRSYCKRKSSMVEYLHKFEQAKKEYRNNEMMAEFRSLFSEPVLTTYLRSIEKEASKIYTQEIFKEFKQEIEKANALIVCERSVLEENVMFTLKKFCTPGKVVHVMFYTANTSFMCDCRHFESRGIPCSHIISVMRSEDIDHIPNNLICKRWLKNAKIDFMSHYQHDEMDSDVMEEACFAAVSSACNNFAKVASKKRNYLKEILEDIRQLTIKYEKLGDKVCTDGNPSAEHVGDPNSVKTKGAPRKKKDNRKRRRHCSNCGSTGHTIRRCPLRYGTDQNSKRDEKLEKSESGANDSVSV. 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01919 714 Pfam SWIM zinc finger 531 550 IPR007527 GO:0008270
Seca1g01919 714 MobiDBLite consensus disorder prediction 640 714 - -
Seca1g01919 714 Pfam MULE transposase domain 241 335 IPR018289 -
Seca1g01919 714 SUPERFAMILY Retrovirus zinc finger-like domains 660 691 IPR036875 GO:0003676|GO:0008270
Seca1g01919 714 ProSiteProfiles Zinc finger CCHC-type profile. 672 686 IPR001878 GO:0003676|GO:0008270
Seca1g01919 714 ProSiteProfiles Zinc finger SWIM-type profile. 523 554 IPR007527 GO:0008270
Seca1g01919 714 PANTHER OS01G0519700 PROTEIN 33 672 - -
Seca1g01919 714 MobiDBLite consensus disorder prediction 659 674 - -
Seca1g01919 714 SMART 26again6 529 556 IPR006564 GO:0008270
Seca1g01919 714 Pfam FAR1 DNA-binding domain 47 119 IPR004330 -
Seca1g01919 714 MobiDBLite consensus disorder prediction 690 706 - -
Seca1g01919 714 Coils Coil 615 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01919 Seca-Chr1 37492132 37494330 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g01919 MULE 4.2e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01919 - - ccaj:109792835 894.804