Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01916 ATGGTTGCTGCGTTTGACCCAGTGAAAAACGTTTATCCGGCCAGACAGAGATGGAGGTTGAAAGTAAGGGTTGAGAGGGTTTGGGAAATGTTCCCACTTGATGAGCCATCGAAACCCTTTTCTGTGGAGATGGTACTGATTGACTCCGAGGGTGTTAAAATCCAGGCCACCATCAGGAAAACAATGATGAAAAAGTTTAAAGGAGTTATCCAAGAGGGTGAGGTTTATAAGATGTATTTTTTCGGTGTCGTTCGAAACCTTGGTTCTTTCCGAGCAACGCGTCATGAATACAAGTTGTTGTTTCATTCACGGAAAAAGGTCTCCCGTTGCGAGGCGTTAACTATACCATTTATTGGATTAGTGCCATCGAGCTCTAAGGAAATCATTGATATTGGGGGTCAGAGTGATTTTTTTATGGACTTTGTTGGAGTGATGATGACTGTGTTAGATGATAAGCGGTCTGTTCGAGAAGGCCGTACCACAAGGGCTATTCAGATGGAGCTGGTCGATGAAAATATGCGAAAGTCAGGAAATTTCGAGATTGGTTTAATTGAACTGCAAAATGTGCTTAACACCACACGTATACTTTGGAATCCTGATATTGCGCCGACTGTTGAATTCAGGCACAGTACCGTGTCTAATGGGGTTGAGTTGATCAGGCCACTCGGCACCATTGAGGACTACAATGCCATGTACCCTCCCGCTGAGGAGTTCCTCCACATGTTTCCCAGAAAAACCATTCGCGAGTTGCATGAGACTGAAGAGGATGGTTTTTTCATTGTTTTGGCTGTGATAGTTATTCTACTGGGTGATAATCAGTGGTGGTATGTTGCATGCAAGTGCAATAGGGCACTAACAAAGATCGGAGACAAGTATTATTGTTCCCACTGCGCCTCTGACGTTGAAGTTGTTAGTCCCAGGTACAAGTTAAAAATAGAAGTTTACGATGGGGAGGACACAACAACTTTTATAATGTTCGATTCTGCTGCAGAACTCTTGACTGGTACATCATGTGAGGTGAAGCTTAGTGCATACAAGGATGGTGGAGCTGACCAGTTGCCACCTGAGCTGGAAAATCTCAGGGGAAAGGAATTGCTTCTTAGGGTTGAAAAAGCATATGACTATGCGTTCAAATATGATGACACATATCGGGTGAAGAAGTGGGAAAACCCTAATTCTCCTTCAAGAAGTCAATCTGGATCTAGGTTTAAAAGCTGTTGCGCGTCATGCGCTTCATATGCGCTTAGCGCATATGAAACGCGGTCAATATATGTTGCGCTCCACCTGCGCTTAGCGCAGAGGAAGTTTCCCATTCCCTTCCCTAGCCTGGATGAGATACCTGAGGATGGTATCAAGCTCACTAATGTGAACACTAAGGAGGATCTGCCTGAGGATAGACAAGATGAGTCATTCAATGTAGCTGGTTACCTTTCAGAGGACGCAGGCTGCCCCATTGCGTCCTCGTCAGAGCTTGGTGAGTGCTCAACTGAATCTGCAGGACCTGGTGTCAAGGGAAAGGCGAAGAATGGTCGTTGA 1536 0.4512 MVAAFDPVKNVYPARQRWRLKVRVERVWEMFPLDEPSKPFSVEMVLIDSEGVKIQATIRKTMMKKFKGVIQEGEVYKMYFFGVVRNLGSFRATRHEYKLLFHSRKKVSRCEALTIPFIGLVPSSSKEIIDIGGQSDFFMDFVGVMMTVLDDKRSVREGRTTRAIQMELVDENMRKSGNFEIGLIELQNVLNTTRILWNPDIAPTVEFRHSTVSNGVELIRPLGTIEDYNAMYPPAEEFLHMFPRKTIRELHETEEDGFFIVLAVIVILLGDNQWWYVACKCNRALTKIGDKYYCSHCASDVEVVSPRYKLKIEVYDGEDTTTFIMFDSAAELLTGTSCEVKLSAYKDGGADQLPPELENLRGKELLLRVEKAYDYAFKYDDTYRVKKWENPNSPSRSQSGSRFKSCCASCASYALSAYETRSIYVALHLRLAQRKFPIPFPSLDEIPEDGIKLTNVNTKEDLPEDRQDESFNVAGYLSEDAGCPIASSSELGECSTESAGPGVKGKAKNGR. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01916 511 SUPERFAMILY Nucleic acid-binding proteins 242 390 IPR012340 -
Seca1g01916 511 Gene3D - 4 110 IPR012340 -
Seca1g01916 511 CDD RPA1_DBD_C 245 369 IPR047192 -
Seca1g01916 511 CDD RPA1_DBD_A_like 19 107 - -
Seca1g01916 511 MobiDBLite consensus disorder prediction 487 511 - -
Seca1g01916 511 Pfam Replication factor-A C terminal domain 258 385 IPR013955 -
Seca1g01916 511 SUPERFAMILY Nucleic acid-binding proteins 4 111 IPR012340 -
Seca1g01916 511 PANTHER OS03G0429900 PROTEIN 245 370 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca1g01916 511 Pfam Domain of unknown function DUF223 43 112 IPR003871 -
Seca1g01916 511 Gene3D - 240 399 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01916 Seca-Chr1 37451302 37455574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01916 1 339 Core DNA Replication Machinery Family AT5G08020 23.174 2.59e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01916 - - lja:Lj6g3v0884310.1 312.768