Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01914 ATGGCTGCTACTCTTGACTCCTCTCCAAAAACTGTTAAATCTTGCACTACTCCTAAGAAACCCTCCAACAACCCCATTTCAGTTTCCAAGGTCAGGGTCATCGTCAGGGTAAGGCCCTTCATTTCTCACGAAATCTCAGCAAGAAATGGTCACCATGTTTCATGTATCTCCGTCTTGGACCAAGATTTTGAATCTCCAGAAGGAGAAGTAGCCGTTTATCTCAAAGACCCAGAAACCAGCCGAAATGAGTGCTACCAGTTGGACTCTTTCTTTGCACAACAAGATAACAATGTGGGTCAGATATTCTGCAAAGAAGTAAGCCCCATGATACCAGGAATCTTTAATGGCTGCAATGCCACTGTGTTTGCTTATGGGGCTACTGGAAGTGGGAAGACATACACCATGCAGGGAACTGAGGAACAACCTGGATTGATGCCACTGGCAATGTCCATGATCCTGTCTATTTGCCAAAGCACTGGCAGCACAGCACAGATTTCATACTATGAGGTCTACATGGACCGATGTTATGACCTCTTGGAGGTCAAAGCAAAAGAAATTTCAGTTTGGGATGACAAAGATGGGCAAGTTCATCTCCGGGGACTATCTCAGGTTCCTATAAACACAATGTCTGAATTTCAGGAGGTTTTCTCCTGTGGAGTTCAGAGACGTAAAGTTGCACACACAGGCCTCAATGATGTCTCCAGTAGGAGCCATGGAGTGCTTGTGATATCTGTATCCACTCCTTCTTCTGATGGAACTGCAAGCACCATATGTGGAAAGCTGAATCTCATAGACTTGGCAGGTTACTTCCATACTCAATTGGGGTCAGCTATTGCAAGCATTTATAGTTATACTAATGTAATGTGTTTTAAAATTGATGCAGGTAATGAAGACAACAGAAGGACCTGCAATGAAGGGATTCGTCTCCAAGAGAGTGCCAAAATAAACCAATCCTTGTTTGCACTGTCAAATGTGATATATGCATTGAACAACAAGAAACCAAGAGTACCCTACAGAGAAAGCAAATTGACCCGTATATTGCAGGACTCTGTAGGGGGAACTAGTCATGCGCTGATGGTTGCTTGTCTGAATCCAGGAGAATACCAGGAATCTGTTCATACTGTTAGTTTGGCTGCTCGATCAAGGCATATCTCTAATTTTGTACCTTCAGCTCATAAACAAGAGACCCCAAAAGTTAAAGTTGACATGGAAGCCAAATTGAAAGCTTGGCTAGAATCAAAAGGCAAAACAAAGAGTTCTCAAAGACTTGGGGCATTTAATTCTCCACTTTTGAAGAAAACTCCCAGTTCCATCATTACCCCTGCTAAGAGATGTGTTACCTTTAATAGTTCAGTGAAGGGGGGAAGAACTGCCATCAACCAAGATGCTCAACAACATACAAACGAAAGGGCCTTTGCTGTGGCTTTTAGAAATTTACTAGATGGTGAAGGTCCTTTTGATTCTTGCATGGAGGACCTACATTGTGGTGTTAAGGACAATAATAACAGAGAGACTGAGCATGATACCAATAAGGCTGCATGGGAATCATGTAAAAATATGCCTGACTCGCCAATTACAAATGAGAGTAAAAATGCAGTACAAAGTCCTTTAAGAAAAGCCCTCTCCCCCATCAACATCAATGGTAATCAAAAGTCCCTTGAGGCACTGTCTTTGACACAAACACCTTTTGCAACCTGCTCCACTAATAAAGGGTTACAAAAGAATGGCACTCCACTTGACAAATTCAGTACACGAAGTTCTAAACTGAAGAACTGTCTAGTTCAAGAATACATTGATTTCTTAAACAATGCAAGCAGAGAGGAACTACTAGAGTTGAAGGGCATAGGAGAGAAAATGGCAGAATACATAATAGACCTTAGAGAAGAAAGCCCAATAAAATCGTTAAGTGATTTGGAGAAGATTGGTCTCTCTTCAAAGCAGGCCCATAACCTGTTCACTAAAGCTACAAAGAAACTATTCGAAGATAAAGCAGAAGATTCAATACTCAGTTGA 2013 0.4178 MAATLDSSPKTVKSCTTPKKPSNNPISVSKVRVIVRVRPFISHEISARNGHHVSCISVLDQDFESPEGEVAVYLKDPETSRNECYQLDSFFAQQDNNVGQIFCKEVSPMIPGIFNGCNATVFAYGATGSGKTYTMQGTEEQPGLMPLAMSMILSICQSTGSTAQISYYEVYMDRCYDLLEVKAKEISVWDDKDGQVHLRGLSQVPINTMSEFQEVFSCGVQRRKVAHTGLNDVSSRSHGVLVISVSTPSSDGTASTICGKLNLIDLAGYFHTQLGSAIASIYSYTNVMCFKIDAGNEDNRRTCNEGIRLQESAKINQSLFALSNVIYALNNKKPRVPYRESKLTRILQDSVGGTSHALMVACLNPGEYQESVHTVSLAARSRHISNFVPSAHKQETPKVKVDMEAKLKAWLESKGKTKSSQRLGAFNSPLLKKTPSSIITPAKRCVTFNSSVKGGRTAINQDAQQHTNERAFAVAFRNLLDGEGPFDSCMEDLHCGVKDNNNRETEHDTNKAAWESCKNMPDSPITNESKNAVQSPLRKALSPININGNQKSLEALSLTQTPFATCSTNKGLQKNGTPLDKFSTRSSKLKNCLVQEYIDFLNNASREELLELKGIGEKMAEYIIDLREESPIKSLSDLEKIGLSSKQAHNLFTKATKKLFEDKAEDSILS. 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01914 670 SUPERFAMILY RuvA domain 2-like 596 646 IPR010994 -
Seca1g01914 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 388 IPR027417 -
Seca1g01914 670 Gene3D Kinesin motor domain 14 385 IPR036961 -
Seca1g01914 670 ProSiteProfiles Kinesin motor domain profile. 30 384 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca1g01914 670 Pfam Kinesin motor domain 36 268 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca1g01914 670 Pfam Kinesin motor domain 294 384 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca1g01914 670 Gene3D - 587 658 - -
Seca1g01914 670 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 29 507 IPR027640 GO:0003777|GO:0007018
Seca1g01914 670 MobiDBLite consensus disorder prediction 1 24 - -
Seca1g01914 670 SMART kinesin_4 28 392 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca1g01914 670 FunFam Kinesin-like protein KIN-10C 587 659 - -
Seca1g01914 670 CDD KISc_KID_like 31 382 - -
Seca1g01914 670 Pfam Helix-hairpin-helix motif 601 641 - -
Seca1g01914 670 PRINTS Kinesin heavy chain signature 116 137 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca1g01914 670 PRINTS Kinesin heavy chain signature 228 245 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca1g01914 670 PRINTS Kinesin heavy chain signature 336 357 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca1g01914 670 PRINTS Kinesin heavy chain signature 260 278 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01914 Seca-Chr1 37390571 37395577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01914 30 423 Calmodulin-binding Proteins AT5G65930 30.446 1.09e-40 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01914 K10403 - gmx:100804591 1033.86