Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01911 ATGAATGCTCATCGTTTACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTTCCTGGAAGGACTGATAACGCAATAAAGAACCACTGGAATAGTTCTTTGAAGAAAAAATTGGAATTTTATTTAACTACAGGAAGACTTCCACCAATTCCAAAGAACAGCCCTCAAGTCGCTGCCAAAGATACAATTAGACATTCTGCTACTAAACCAATACTTGTTTGTTCAAATAAAGAATTACATGTTTCTGTTGAAACATCATCTGAAACTACAGCCATTAGTAAGCTAGATGACAGTGGCAAGAATCAGTTTGAGTCCTCAGGAACAGTTAGAGAAGTTGGTGATTCTTCAAGTATTCCTGCAAATGAATCTGCTGATTCTGACTGTGTAGAATGCAAGACTGGATCATCCAATGTGGATCTAAGCTGTGGAAACTCAGAACAAGTATCAAGAGCTAATTTTGGACCAACATATGGGCCAAAATCTGAGAATTCTGGACTTAATGGAAACCCGACAATTGAGCATTGTTTAAACAATGCTAAAATGAGCAGTAGCAGGTTAATCGGAACATCTTTGCATGAGGGTCCAACCTGTGGTTCTTTGTATTATAAGCCACCACAGTTAGATGGTTCACTTCCTTTAGATTCTCTTTATTTAAATATTGTTTGCCTGCAGAATGAGTACTGTTCTAATCCAATGTTGTCGCCTATTGGTTTCTTGACTCCACCTTGTGTAAAGGGTAGTGAATTATGCACAGAGACACCTCAATCAATTCTGAAGAAGGCTGCAAATACTTTTCCAAATACTCCTTCCATATTGAGGAGGAGAAAAACTGGAGTCCAAACACACACTACTCCTAGTAAAGTTTTGAAAGTAGATAATGATTCACATACTTCTATTGAACCAGATAGAATGAAGGATAATTCTGGTCCTGAAGTTAGGACATTCTCTGTGAGTCCAGCAAGCCATGACAATGGGAATGACATTCCCAATAATAAGGCATTCAATGCATCTCCACCATATCGGTTAAGACCCAAGCGAACAGCCGTTGCAAAGTCCGTGGAGAAACAACTTGAGTTTGCATTTGACAAAGAGAAGAATGATGACAATATCAACACAAAGGGTAGATCTGCAAAGAGGAGCAATTTGATGACTGAAGAGTGTCTGCATGAAACAAAATTGGTAGTGACATAA 1191 0.3871 MNAHRLHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLEFYLTTGRLPPIPKNSPQVAAKDTIRHSATKPILVCSNKELHVSVETSSETTAISKLDDSGKNQFESSGTVREVGDSSSIPANESADSDCVECKTGSSNVDLSCGNSEQVSRANFGPTYGPKSENSGLNGNPTIEHCLNNAKMSSSRLIGTSLHEGPTCGSLYYKPPQLDGSLPLDSLYLNIVCLQNEYCSNPMLSPIGFLTPPCVKGSELCTETPQSILKKAANTFPNTPSILRRRKTGVQTHTTPSKVLKVDNDSHTSIEPDRMKDNSGPEVRTFSVSPASHDNGNDIPNNKAFNASPPYRLRPKRTAVAKSVEKQLEFAFDKEKNDDNINTKGRSAKRSNLMTEECLHETKLVVT. 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01911 396 Pfam Myb-like DNA-binding domain 2 32 IPR001005 -
Seca1g01911 396 SUPERFAMILY Homeodomain-like 2 40 IPR009057 -
Seca1g01911 396 ProSiteProfiles Myb-like domain profile. 1 34 IPR001005 -
Seca1g01911 396 Gene3D - 1 62 - -
Seca1g01911 396 MobiDBLite consensus disorder prediction 296 341 - -
Seca1g01911 396 CDD SANT 2 34 IPR001005 -
Seca1g01911 396 MobiDBLite consensus disorder prediction 311 333 - -
Seca1g01911 396 MobiDBLite consensus disorder prediction 86 127 - -
Seca1g01911 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 38 IPR017930 -
Seca1g01911 396 PANTHER MYB PROTEIN-RELATED 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01911 Seca-Chr1 37267589 37274720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01911 1 369 MYB Transcription Factor Family AT5G02320 40.000 1.07e-55 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca1g01911 Myb_DNA-binding 5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01911 K09422 - gmx:778081 615.92