Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01906 ATGAAGGATAGGCAACGGTGGAGAGCAGACGAGGATACTTTACTACATGCTTATGTCAAACAATATGGTCCAAGGGAATGGAATCTTGTGTCTCAGCGCATGAACACACCTCTTAATAGGGATGCCAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCAAGCCTGGTATTAAGAAAGGATCTCTCACTGAAGAAGAGCAGCGCCTTGTCATCAATCTTCAAGCAAAACACGGCAACAAATGGAAGAAAATCGCCACGCAAGTCCCCGGCCGCACTGCTAAGAGGTTAGGGAAGTGGTGGGAAGTATTCAAAGAGAAGCAGCAAAGAGAAACAAAAGGGATTAATAGAACTGTTGATCCGATTAACAATAGCAAGTACGAGCATATACTTGAGAGTTTTGCAGAGAAACTAGTGAAAGAGCGCCCTTCACCATCATTTCTCATGGCAACTTCTAACAATTCTTTTCTGCACACTGATACACCAGCTCTGCTTCCTTCATGGCTTTCAAATTCGAAAAGCACTGCACCTGTTAGGCAACCTTCCCCTTCTGTGACACTTAGTCTTTCTCCCTCAACAGTGGCAGCACCTCCTCCATGGTTGCAACCTGTTCGAGGAGGACCGGAGAGTGCTCCTCTTGTCTTGGGGAATGTAACTACTACACCTCATGGGGGTGTTTTACCTTATGGTGAAAACATGGTGATGTCTGAGTTGGTTGAGTGCTGTAAGGAGTTGGAGGAAGTGCATCACGCCTTGGCAGCACATAAGAAGGAGGCGGCATGGCGGTTAAGCCGGGTGGAGTTGCAGTTGGAATCTGAGAAGGCATGTAGAAGGAGGGAGAAAATGGAAGAAATTGAAGCAAAGATAAAAGCTCTGAGGGAGGAGCAGATATCTGCTTTGGATAGAATTGAAGCAGAATACAGGGAACAGTTAGCAGGGTTGAGAAGAGATGCAGAAACCAAAGAGCAGAAGTTAGCTGAGCAATGGGCTGCAAAACACTTGCGCCTTACCAAGTTTCTTGAGCAAGTAGGATGCAGATCAAGGCTCTCTGAACCAAATGGAAGATAG 1065 0.461 MKDRQRWRADEDTLLHAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVINLQAKHGNKWKKIATQVPGRTAKRLGKWWEVFKEKQQRETKGINRTVDPINNSKYEHILESFAEKLVKERPSPSFLMATSNNSFLHTDTPALLPSWLSNSKSTAPVRQPSPSVTLSLSPSTVAAPPPWLQPVRGGPESAPLVLGNVTTTPHGGVLPYGENMVMSELVECCKELEEVHHALAAHKKEAAWRLSRVELQLESEKACRRREKMEEIEAKIKALREEQISALDRIEAEYREQLAGLRRDAETKEQKLAEQWAAKHLRLTKFLEQVGCRSRLSEPNGR. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01906 354 Gene3D - 62 128 - -
Seca1g01906 354 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Seca1g01906 354 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Seca1g01906 354 Coils Coil 303 323 - -
Seca1g01906 354 FunFam MYB-related transcription factor 4 58 - -
Seca1g01906 354 CDD SANT 6 53 IPR001005 -
Seca1g01906 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Seca1g01906 354 Pfam Myb-like DNA-binding domain 7 68 - -
Seca1g01906 354 Gene3D - 4 58 - -
Seca1g01906 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Seca1g01906 354 CDD SANT 63 104 IPR001005 -
Seca1g01906 354 Coils Coil 281 301 - -
Seca1g01906 354 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Seca1g01906 354 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 349 - -
Seca1g01906 354 MobiDBLite consensus disorder prediction 171 190 - -
Seca1g01906 354 SMART sant 3 55 IPR001005 -
Seca1g01906 354 SMART sant 58 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01906 Seca-Chr1 37048717 37051946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01906 1 345 MYB Transcription Factor Family AT2G37630 64.850 2.52e-155 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca1g01906 Myb_DNA-bind_6 8.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01906 K09422 - gmx:100819082 590.112