Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01904 ATGCCTCATGAAGCTCGGATTCGAATTATATGCACCTCTCTTTGTCACAGTGATATCATTTTCTGGAAGATGGAGCTGAAGGAACCCCCTGCAATCTATCCAAGAATTCTGGGTCATGAGGCAATTGGGGTTGTGGAAAGTGTAGGAGAGGGTGTAACTGAAGTTACAAAAGGAGATATGGTTATCCCAATTTTCATTGCTGATTGTGGGGAGTGTATAGATTGCAAATCAACCAAGAGTAACCTTTGTTCAAAGTTTCCTTTCAAGGTGTCTCCTGGGATGCTTAGATATGATACCACTAGATTCACTGATCTAAAAGGAGAGATCATACATCATTTCTTGTCTGTTTCTAGTTTTAGTGAGTACACTGTGGTTGACATTGCCAATCTAACCAAGATTGATCCAACAATTCCTCCCAACAAGGCATGCCTCCTCAGTTGTGGTGTATCAACAGGGGTAGGTGCTGCTTGGAGAACTGCAGATGTGGAGCCAGGATCTACAATAGCTATTTTTGGACTAGGATGCATTGGATTAGCAGTTGCTGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATAGGTGTAGATGTCAACCCAGAAAAATCTGAACTTGGAAAAAAGTTTGGACTCACTGACTTTGTTCATGCTAGAGAATGTGTAAACAAATCTGTTGTGGAGCAGGTTATCATAGAGATGACTGGTGGGGGAGCAGATTATTGCTTTGAATGTGTTGGTATGGCATCATTGGTGCAAGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGGAAAACAATTGTTTTAGGAGTGGACAAGCCAGAGGCCAACTTGAACCTTAGCTGTAGTGAGGTCCTTATTGAAGGGAAGAGTCTCATGGGTTGCTTATTTGGAGGACTTAAACCTAAGTCTCATGTACCCATTCTCCTTAAACGCTACATGGATAAGGAGCTGAAGTTGGATGAGTTTGTCACACACGAGGTAGAGTTTAACGACATCAATAAAGCTTTTGATTTATTGGTTAAAGGACAGAGTCTTCGATGTGTGATTTGGATGGACAAATGA 1059 0.4193 MPHEARIRIICTSLCHSDIIFWKMELKEPPAIYPRILGHEAIGVVESVGEGVTEVTKGDMVIPIFIADCGECIDCKSTKSNLCSKFPFKVSPGMLRYDTTRFTDLKGEIIHHFLSVSSFSEYTVVDIANLTKIDPTIPPNKACLLSCGVSTGVGAAWRTADVEPGSTIAIFGLGCIGLAVAEGARLCGATRIIGVDVNPEKSELGKKFGLTDFVHARECVNKSVVEQVIIEMTGGGADYCFECVGMASLVQEAYASCRKGWGKTIVLGVDKPEANLNLSCSEVLIEGKSLMGCLFGGLKPKSHVPILLKRYMDKELKLDEFVTHEVEFNDINKAFDLLVKGQSLRCVIWMDK. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01904 352 SUPERFAMILY GroES-like 2 171 IPR011032 -
Seca1g01904 352 SUPERFAMILY GroES-like 301 349 IPR011032 -
Seca1g01904 352 Gene3D - 2 345 - -
Seca1g01904 352 Gene3D - 152 293 - -
Seca1g01904 352 PANTHER ALCOHOL DEHYDROGENASE 3 348 - -
Seca1g01904 352 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 38 52 IPR002328 GO:0008270|GO:0016491
Seca1g01904 352 Pfam Alcohol dehydrogenase GroES-like domain 2 132 IPR013154 -
Seca1g01904 352 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 137 313 IPR036291 -
Seca1g01904 352 Pfam Zinc-binding dehydrogenase 176 297 IPR013149 -
Seca1g01904 352 FunFam S-(hydroxymethyl)glutathione dehydrogenase 152 293 - -
Seca1g01904 352 FunFam Alcohol dehydrogenase 6 1 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01904 Seca-Chr1 36982761 36986212 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01904 4 299 Monolignol Biosynthesis Gene Families AT4G37990 25.000 1.93e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01904 K00121 - gmx:100806887 595.119