Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01902 ATGGAAGAAAAACTAGCAAGAACAACTGAAGGACAACCCATAAGATGTAAAGCTGCTGTTTGTCGCAAACCAGGTGAGCCATTGACTATTGAGGAGATCATTGTGGCACCACCAATGCCTCATGAAGCTCGGATTCGAATTATATGCACCTCTTTTTGTCACAGTGATATCATTTTCTGGAAGATGGAGCTGAAGGAACCCCCTGCAATCTGTCCAAGAATTCTGGGTCATGAGGCAATTGGGGTTGTGGAAAGTGTAGGAGAGGGTGTAACTGAAGTTACAAAAGGAGATATGGTTATCCCAATTTTCATTGCTGATTGTGGGGAGTGTATAGATTGCAAATCAACCAAGAGTAACCTTTGTTCAAAGTTTCCTTTCAAGGTGTCTCCTGGGATGCTTAGATATGATACCACTAGATTCACTGATCTAAAAGGAGAGATCATACATCATTTCTTGTCTGTTTCTAGTTTTAGTGAGTACACTGTAGTTGACATTGCCAATCTAACCAAGATTGATCCAGCAATTCCTCCCAACAAGGCATGCCTCCTCAGTTGTGGTGTATCAACAGGGGTAGGTGCTGCTTGGAGAACTGCAGATGTGGAGCCAGGATCTACAGTAGCTATTTTTGGATTGGGATGCATTGGATTAGCAGTTGCTGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATAGGTGTAGATGTCAACCCAGAAAAATCTGAACTTGGAAAAAAGTTTGGACTCACTGACTTTGTTCATGCTGGAGAATGTGTAAACAAATTTGTTGTGGAGCAGGTTATCATAGAGATGACTGGTGGGGGAGCAGATTATTGCTTTGAATGTGTTGGTATGGCATCATTGGTGCAAGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGGAAAACAATTGTTTTAGGAGTGGACAAGCCAGAGGCCAACTTGAACCTTAGCTGTAGTGAGGTCCTTATTGAAGGGAAGAGTCTCATGGGTTGCTTATTTGGAGGACTTAAACCTAAGTCTCATGTACCCATTCTCCTTAAACGCTACATGGATAAGGAGCTGAAGTTGGATGAGTTTGTCACACACGAGGTAGAGTTTAACGACATCAATAAAGCTTTTGATTTATTGGTTAAAGGACAGAGTCTTCGATGTGTGATTTGGATGGACAAATGA 1173 0.422 MEEKLARTTEGQPIRCKAAVCRKPGEPLTIEEIIVAPPMPHEARIRIICTSFCHSDIIFWKMELKEPPAICPRILGHEAIGVVESVGEGVTEVTKGDMVIPIFIADCGECIDCKSTKSNLCSKFPFKVSPGMLRYDTTRFTDLKGEIIHHFLSVSSFSEYTVVDIANLTKIDPAIPPNKACLLSCGVSTGVGAAWRTADVEPGSTVAIFGLGCIGLAVAEGARLCGATRIIGVDVNPEKSELGKKFGLTDFVHAGECVNKFVVEQVIIEMTGGGADYCFECVGMASLVQEAYASCRKGWGKTIVLGVDKPEANLNLSCSEVLIEGKSLMGCLFGGLKPKSHVPILLKRYMDKELKLDEFVTHEVEFNDINKAFDLLVKGQSLRCVIWMDK. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01902 390 SUPERFAMILY GroES-like 339 387 IPR011032 -
Seca1g01902 390 Gene3D - 19 383 - -
Seca1g01902 390 Pfam Alcohol dehydrogenase GroES-like domain 40 170 IPR013154 -
Seca1g01902 390 FunFam S-(hydroxymethyl)glutathione dehydrogenase 190 331 - -
Seca1g01902 390 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 76 90 IPR002328 GO:0008270|GO:0016491
Seca1g01902 390 FunFam Alcohol dehydrogenase 6 19 202 - -
Seca1g01902 390 Pfam Zinc-binding dehydrogenase 214 335 IPR013149 -
Seca1g01902 390 SUPERFAMILY GroES-like 9 199 IPR011032 -
Seca1g01902 390 Gene3D - 190 331 - -
Seca1g01902 390 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 175 351 IPR036291 -
Seca1g01902 390 PANTHER ALCOHOL DEHYDROGENASE 11 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01902 Seca-Chr1 36958808 36962701 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01902 42 337 Monolignol Biosynthesis Gene Families AT4G37990 24.013 1.97e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01902 K00121 - gmx:100806887 667.922