Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01900 ATGGAAGAAAAACTAGCAAGAACAACTGAAGGACAACCCATAAGATGTAAAGCTGCTGTTTGTCACAAACCAGGTGAGCCATTGACTATTGAGGAGATCATTGTGGCACCACCAATGCCTCATCTAGCTCGGATTCGAATTATATGCACCTCTCTTTGTCACAGTGATATCATTTTCTGGAAGATGGAGCTGAAGGAACCCCCTGCAATCTGTCCAAGAATTCTGGGTCATGAGGCAATTGGGGTTGTGGAAAGTGTAGGAGAGGGTGTAACTGAAGTTACAAAAGGTGATATGGTTATCCCAATTTTCATTGCTGATTGTGGGGAGTGTATAGATTGCAAATCAACCAAGAGTAACCTTTGTTCAAAGTTTCCTTTCAAGGTGTCTCCTGGGATGCTTAGATATGATACCACTAGATTCACTGATCTAAAAGGAGAGATCATACATCATTTCTTGTCTGTTTCTAGTTTTAGTGAGTACACTGTGGTTGACATTGCCAATCTAACCAAGATTGATCCAGCAATTCCTCCCAACAAGGCATGCCTCCTCAGTTGTGGTGTATCAACAAGGGTAGGTGCTGCTTGGAGAACTGCAGATGTGGAGCCAGGATCTACAGTAGCTATTTTTGGACTAGGATGCATTGGATTAGCAGTTGCTGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATAGGTGTAGATGTCAACCCAGAAAAATCTGAACTTGGAAAAAAGTTTGGACTCACTGACTTTGTTCATGCTGGAGAATGTGTAAACAAATCTGTTGTGGAGCAGGTTATCATAGAGATGACTGGTGGGGGAGCAGATTATTGCTTTGAATGTGTTGGTATGGCATCATTGGTGCAAGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGGAAAACAATTGTTTTAGGAGTGGACAAGCCAGAGGCCAACTTGAACCTTAGCTGTAGTGAGGTCCTTATTGAAGGGAAGAGTCTCATGGGTTGCTTATTTGGAGGACTTAAACCTAAGTCTCATGTACCCATTCTCCTTAAACGCTACATGGATAAGGAGCTGAAGTTGGATGAGTTTGTCACACAAGAGGTAGAGTTTAACGACATCAATAAAGCTTTTGATTTATTGGTTAAAGGACAGAGTCTTCGATGTGTGATTTGGATGGACAAATGA 1173 0.422 MEEKLARTTEGQPIRCKAAVCHKPGEPLTIEEIIVAPPMPHLARIRIICTSLCHSDIIFWKMELKEPPAICPRILGHEAIGVVESVGEGVTEVTKGDMVIPIFIADCGECIDCKSTKSNLCSKFPFKVSPGMLRYDTTRFTDLKGEIIHHFLSVSSFSEYTVVDIANLTKIDPAIPPNKACLLSCGVSTRVGAAWRTADVEPGSTVAIFGLGCIGLAVAEGARLCGATRIIGVDVNPEKSELGKKFGLTDFVHAGECVNKSVVEQVIIEMTGGGADYCFECVGMASLVQEAYASCRKGWGKTIVLGVDKPEANLNLSCSEVLIEGKSLMGCLFGGLKPKSHVPILLKRYMDKELKLDEFVTQEVEFNDINKAFDLLVKGQSLRCVIWMDK. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01900 390 PANTHER ALCOHOL DEHYDROGENASE 11 386 - -
Seca1g01900 390 Pfam Alcohol dehydrogenase GroES-like domain 42 170 IPR013154 -
Seca1g01900 390 SUPERFAMILY GroES-like 339 387 IPR011032 -
Seca1g01900 390 Gene3D - 190 331 - -
Seca1g01900 390 FunFam S-(hydroxymethyl)glutathione dehydrogenase 190 331 - -
Seca1g01900 390 Gene3D - 19 383 - -
Seca1g01900 390 Pfam Zinc-binding dehydrogenase 214 335 IPR013149 -
Seca1g01900 390 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 175 351 IPR036291 -
Seca1g01900 390 SUPERFAMILY GroES-like 9 200 IPR011032 -
Seca1g01900 390 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 76 90 IPR002328 GO:0008270|GO:0016491
Seca1g01900 390 FunFam Alcohol dehydrogenase 6 19 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01900 Seca-Chr1 36934883 36938907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01900 44 337 Monolignol Biosynthesis Gene Families AT4G37990 24.172 1.18e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01900 K00121 - gmx:100806887 660.603