Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g01896 | ATGGGTGCTTGCTGGAGCAACCGGATTAAGGCTGTGAGTCCTTCAAATACAGGGTTCACTTCTAGAAGTGTAAGTAGGAGTGGCTATGACATCAGCTCAACTAGCAGGAACTCATCATCCTCCATATCTGTTGCTTCACGAAGTGAGGGTGAAATCTTGCAATCTTCCAATTTGAGAAACTTCACCTACAATGAGCTAAGAGCAGCAACAAGAAATTTCCGCCCAGATAGTGTCTTAGGAGAGGGTGGGTTTGGATCAGTTTTTAAGGGCTGGCTTGATGAGAATTCACTTGCTGCCACCAAACCAGGAATGGGTATGATTGTTGCTGTGAAGAGGCTTAACCAAGAAGGGTTCCAGGGTCACAGAGAATGGTTGGCTGAAATAAACTATCTTGGGCAACTGCATCATCCTAATCTTGTCAAGTTAATAGGATACTGCTTTGAAGATGAGCATCGGCTTCTGGTTTATGAATTTATGCCTAAGGGTAGCATGGAAAATCACCTGTTCAGAAGAGGTTCTTATTTTCAGCCATTCTCTTGGAGTATGCGATTGAAAATAGCCCTTGGGGCAGCAAAGGGTCTTGCTTTTCTCCATAGTACAGAACCTAAAGTCATATACCGTGACTTCAAAACTTCAAATATCCTACTCGATACGAACTATAATGCCAAACTTTCTGATTTTGGGTTAGCCAGAGATGGGCCAACTGGTGATAAAAGCCATGTCTCAACTAGAGTCATGGGAACCCGTGGATATGCAGCACCAGAGTATCTAGCAACAGGTCATCTCACTGCCAAGAGTGATGTATATAGTTTTGGAGTAGTTCTTCTGGAAATGATATCAGGAAGACGAGCTATAGACAAAAACCAACCATCTGGAGAACATAACCTAGTTGAATGGGCCAAGCCTTACCTATCTAACAAACGCAGAGTTTTTCGCATAATGGATCCACGTCTTGAAGGTCAATATTCCCATAGCAGAGCTCAAGCCGCAGCAGCACTTGCTATGCAATGTCTTTCTATAGAACCCAAATGCAGGCCAAACATGGATGAGGTTGTAAGAGCATTGGAGCAACTTCAGGAACCAAATGGCATGCAGAAAAAAGGTGGTGATCAGAAAGAGCATCGCGCACGCAATTCTGGCCTCAGCCACCCTGCATCAAGCAAAGGAAATGCAGATGTTCAAAGAAAGCCTTCTGCTTATCCAAGGCCTTCTGCTTCTCTCCTTAATGCATGA | 1233 | 0.4404 | MGACWSNRIKAVSPSNTGFTSRSVSRSGYDISSTSRNSSSSISVASRSEGEILQSSNLRNFTYNELRAATRNFRPDSVLGEGGFGSVFKGWLDENSLAATKPGMGMIVAVKRLNQEGFQGHREWLAEINYLGQLHHPNLVKLIGYCFEDEHRLLVYEFMPKGSMENHLFRRGSYFQPFSWSMRLKIALGAAKGLAFLHSTEPKVIYRDFKTSNILLDTNYNAKLSDFGLARDGPTGDKSHVSTRVMGTRGYAAPEYLATGHLTAKSDVYSFGVVLLEMISGRRAIDKNQPSGEHNLVEWAKPYLSNKRRVFRIMDPRLEGQYSHSRAQAAAALAMQCLSIEPKCRPNMDEVVRALEQLQEPNGMQKKGGDQKEHRARNSGLSHPASSKGNADVQRKPSAYPRPSASLLNA. | 411 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g01896 | 410 | Gene3D | Transferase(Phosphotransferase) domain 1 | 159 | 381 | - | - | |
Seca1g01896 | 410 | FunFam | Probable serine/threonine-protein kinase PBL8 | 159 | 375 | - | - | |
Seca1g01896 | 410 | Pfam | Protein kinase domain | 76 | 353 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca1g01896 | 410 | Gene3D | Phosphorylase Kinase; domain 1 | 48 | 158 | - | - | |
Seca1g01896 | 410 | FunFam | Serine/threonine-protein kinase BIK1 | 39 | 158 | - | - | |
Seca1g01896 | 410 | PANTHER | OS01G0588500 PROTEIN-RELATED | 37 | 359 | - | - | |
Seca1g01896 | 410 | ProSiteProfiles | Protein kinase domain profile. | 73 | 358 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca1g01896 | 410 | ProSitePatterns | Protein kinases ATP-binding region signature. | 79 | 111 | IPR017441 | GO:0005524 | |
Seca1g01896 | 410 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 204 | 216 | IPR008271 | GO:0004672|GO:0006468 | |
Seca1g01896 | 410 | MobiDBLite | consensus disorder prediction | 12 | 42 | - | - | |
Seca1g01896 | 410 | CDD | STKc_IRAK | 79 | 358 | - | - | |
Seca1g01896 | 410 | MobiDBLite | consensus disorder prediction | 357 | 410 | - | - | |
Seca1g01896 | 410 | SUPERFAMILY | Protein kinase-like (PK-like) | 39 | 355 | IPR011009 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g01896 | Seca-Chr1 | 36772242 | 36776052 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g01896 | 27 | 355 | Glycoside Hydrolase | AT3G07070 | 48.949 | 2.58e-108 | 323 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_RLCK-VIIa-2 | Seca1g01896 | Pkinase | 9.6e-47 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g01896 | - | - | gmx:100793817 | 693.345 |