Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01896 ATGGGTGCTTGCTGGAGCAACCGGATTAAGGCTGTGAGTCCTTCAAATACAGGGTTCACTTCTAGAAGTGTAAGTAGGAGTGGCTATGACATCAGCTCAACTAGCAGGAACTCATCATCCTCCATATCTGTTGCTTCACGAAGTGAGGGTGAAATCTTGCAATCTTCCAATTTGAGAAACTTCACCTACAATGAGCTAAGAGCAGCAACAAGAAATTTCCGCCCAGATAGTGTCTTAGGAGAGGGTGGGTTTGGATCAGTTTTTAAGGGCTGGCTTGATGAGAATTCACTTGCTGCCACCAAACCAGGAATGGGTATGATTGTTGCTGTGAAGAGGCTTAACCAAGAAGGGTTCCAGGGTCACAGAGAATGGTTGGCTGAAATAAACTATCTTGGGCAACTGCATCATCCTAATCTTGTCAAGTTAATAGGATACTGCTTTGAAGATGAGCATCGGCTTCTGGTTTATGAATTTATGCCTAAGGGTAGCATGGAAAATCACCTGTTCAGAAGAGGTTCTTATTTTCAGCCATTCTCTTGGAGTATGCGATTGAAAATAGCCCTTGGGGCAGCAAAGGGTCTTGCTTTTCTCCATAGTACAGAACCTAAAGTCATATACCGTGACTTCAAAACTTCAAATATCCTACTCGATACGAACTATAATGCCAAACTTTCTGATTTTGGGTTAGCCAGAGATGGGCCAACTGGTGATAAAAGCCATGTCTCAACTAGAGTCATGGGAACCCGTGGATATGCAGCACCAGAGTATCTAGCAACAGGTCATCTCACTGCCAAGAGTGATGTATATAGTTTTGGAGTAGTTCTTCTGGAAATGATATCAGGAAGACGAGCTATAGACAAAAACCAACCATCTGGAGAACATAACCTAGTTGAATGGGCCAAGCCTTACCTATCTAACAAACGCAGAGTTTTTCGCATAATGGATCCACGTCTTGAAGGTCAATATTCCCATAGCAGAGCTCAAGCCGCAGCAGCACTTGCTATGCAATGTCTTTCTATAGAACCCAAATGCAGGCCAAACATGGATGAGGTTGTAAGAGCATTGGAGCAACTTCAGGAACCAAATGGCATGCAGAAAAAAGGTGGTGATCAGAAAGAGCATCGCGCACGCAATTCTGGCCTCAGCCACCCTGCATCAAGCAAAGGAAATGCAGATGTTCAAAGAAAGCCTTCTGCTTATCCAAGGCCTTCTGCTTCTCTCCTTAATGCATGA 1233 0.4404 MGACWSNRIKAVSPSNTGFTSRSVSRSGYDISSTSRNSSSSISVASRSEGEILQSSNLRNFTYNELRAATRNFRPDSVLGEGGFGSVFKGWLDENSLAATKPGMGMIVAVKRLNQEGFQGHREWLAEINYLGQLHHPNLVKLIGYCFEDEHRLLVYEFMPKGSMENHLFRRGSYFQPFSWSMRLKIALGAAKGLAFLHSTEPKVIYRDFKTSNILLDTNYNAKLSDFGLARDGPTGDKSHVSTRVMGTRGYAAPEYLATGHLTAKSDVYSFGVVLLEMISGRRAIDKNQPSGEHNLVEWAKPYLSNKRRVFRIMDPRLEGQYSHSRAQAAAALAMQCLSIEPKCRPNMDEVVRALEQLQEPNGMQKKGGDQKEHRARNSGLSHPASSKGNADVQRKPSAYPRPSASLLNA. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01896 410 Gene3D Transferase(Phosphotransferase) domain 1 159 381 - -
Seca1g01896 410 FunFam Probable serine/threonine-protein kinase PBL8 159 375 - -
Seca1g01896 410 Pfam Protein kinase domain 76 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01896 410 Gene3D Phosphorylase Kinase; domain 1 48 158 - -
Seca1g01896 410 FunFam Serine/threonine-protein kinase BIK1 39 158 - -
Seca1g01896 410 PANTHER OS01G0588500 PROTEIN-RELATED 37 359 - -
Seca1g01896 410 ProSiteProfiles Protein kinase domain profile. 73 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01896 410 ProSitePatterns Protein kinases ATP-binding region signature. 79 111 IPR017441 GO:0005524
Seca1g01896 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Seca1g01896 410 MobiDBLite consensus disorder prediction 12 42 - -
Seca1g01896 410 CDD STKc_IRAK 79 358 - -
Seca1g01896 410 MobiDBLite consensus disorder prediction 357 410 - -
Seca1g01896 410 SUPERFAMILY Protein kinase-like (PK-like) 39 355 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01896 Seca-Chr1 36772242 36776052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01896 27 355 Glycoside Hydrolase AT3G07070 48.949 2.58e-108 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca1g01896 Pkinase 9.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01896 - - gmx:100793817 693.345