Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01883 ATGATTATGGATCCACGTCTTGGTGGGTTTAGTGGTTCCACAAATGAAATCCGGTTGGAGAATCAATCCTTGCCAATTCTGCAGAATCAGAGATTTGATAATGGTTTCTTAGATCAAAATAGGGAATTTGGTTACCTTCAGTCAAATCCAATACCAACTGATACACCTTCTTCATCCTCAATTTTGACACATGAGGAAGCTTCTCTAGAGGACTGTGAATTTTCTGATTCAGTTTTGAGTTACATCAATCAGATCCTTATGGAAGAAGACATGGAAGATAAGACATGCATGCTTCAAGATTCTTTAGATCTTCAAATTGCTGAGAAATCATTCTATGAAGTAATAGGTGAAAAGTACCCAGCTTCACCATTAGGAAATCCAAGTCTTGTTAATCAGAATGATGGTGGTGGAGATAATAACTTATTTGAAAACTATGGTACCTACCATGATGATAGTGGTGATCTCAGTAGCATTTTTAACCACAATTCTTTACTTCGAAACTTGGGGGATGCTCCTAACCAAAATTTTCAAGGCAATAGCATCTCACAGTCTTCTTATAGCTCTTCAAATAGTGTAATAAGTAGTGTGGAAGGGCCTGTGGACTCTCCAAACAGCATTCTTCAGGTCCCTGATCAGAACAGTGAGAATCAATCCATTTTGCAATTTCAAAAGGGTGTTGAGGAGGCTAGTAAGTTCCTTCCAAGTGGGAATGGAATCTTTGCTAATTTGGGTGTGGCTAACTTTTCAACATTTGAGCCTAAATTGGGGAATAATGAATCATCAGTTAAGGTGGAGAAGGATGAGGGGGAGTCATTTCTTGTTAGATCCAAGGGAAGGAAGCTTTCCCACAGGGAAGAGGGAGATGTTGAAGAACATAGAAAGAGCAAACAACCTGCAATTTACTCAGAACCTACATTGAGGTCAAATATGGTTGACATAATCCTGCTTCATAGTTTAGGAGATGGTAAGAAGCATTTTACAGCTCGTCGCGAGGCTTTGCAAAATAAGAACAATATGATCATGGTACCAAATGCTAAATCAAAAGCTTCCAATAGTGGTAAGGGGAGAGGTAAGAAACAAAATGGTAAAAAGGAAGTGGTTGATTTAAGAACACTTCTGGTTCTTTGTGCACAAGCTGTTGCAGCGGATGACTGTAAAAGTGCACAGGAGTTCCTAAAGCAGATCAGACAGCATTCAAGCCCTTTTGGAGATGGAAATCAGAGGTTGGCTTATATCTTTGCTGATGGCCTTGAGGCACGCTTGGCTGGTACTGGAAGCCAAATTTATAAAGGACTTATAAATAAAAGAACTTCAGCTGCTGATTTTCTGAAAGCTTATTATCTATACCTTGCTGCTTGCCCTTTTAGGAAGATCACTAGTTTCATCTCAAACATCACAATAAGGACATCTTCAGCAAGTTCAATGAGGCTCCATGTTATAGACTTTGGCATCCTCTATGGTTTCCAATGGCCCACTTTCATACAAAGACTTGCATTAAGATCTGGAGGACCACCTAAACTCAGGATCACAGGAATAGACTTTCCACAACCTGGTTTTAGGCCTGCTGAGAGGATTATAGAAACTGGATCCCGCTTAGCAGCATATGCTGAATCTTTTAATGTGCCATTTGAGTACAATGCCATAGCTAAAAAATGGGAAACAATTCAACTTGATGAACTCAAGATTGATAAGGATGAGTACCTTATTGTTACCTGTTTTTATCGCGGTAAAAACTTGCTAGATGAATCTGTGGTAGTGGACAGTCCAAGGAATAAGTTCCTCAATTTGATAAGGAAGATCAACCCGGATTTATTCATTCATGGCATTATGAATGGAGCATTCAATGCCCCTTTCTTTGTTACTAGATTCAGGGAAGCATTGTTTCACTTCTCTTCACTTTTTGATATGCTTGAAACTATTGTGCCTCGTGAGGACTGGGAGAGGATGCTAATTGAGAAGGAGGTGTTTGGTAGGGAAGCATTGAATGTTATAGCTTGTGAAGGTTGTGAGAGAGTAGAGAGGCCAGAGACATATAGACAGTGGCAAGTTCGAATTCTAAGGGCTGGTTTTTTGCAACAACCTTTTGATCGTGGAATAGTAGAGAGGGCAATAGAGAAAGTAAGGTCTACCTACCACAAGGATTTTGTAATTGATGAAGATGGCCAGTGGTTGTTGCAAGGTTGGAAAGGGAGAATCGTTTATGCCCTTTCTTGTTGGAAATCTGCATGA 2229 0.3984 MIMDPRLGGFSGSTNEIRLENQSLPILQNQRFDNGFLDQNREFGYLQSNPIPTDTPSSSSILTHEEASLEDCEFSDSVLSYINQILMEEDMEDKTCMLQDSLDLQIAEKSFYEVIGEKYPASPLGNPSLVNQNDGGGDNNLFENYGTYHDDSGDLSSIFNHNSLLRNLGDAPNQNFQGNSISQSSYSSSNSVISSVEGPVDSPNSILQVPDQNSENQSILQFQKGVEEASKFLPSGNGIFANLGVANFSTFEPKLGNNESSVKVEKDEGESFLVRSKGRKLSHREEGDVEEHRKSKQPAIYSEPTLRSNMVDIILLHSLGDGKKHFTARREALQNKNNMIMVPNAKSKASNSGKGRGKKQNGKKEVVDLRTLLVLCAQAVAADDCKSAQEFLKQIRQHSSPFGDGNQRLAYIFADGLEARLAGTGSQIYKGLINKRTSAADFLKAYYLYLAACPFRKITSFISNITIRTSSASSMRLHVIDFGILYGFQWPTFIQRLALRSGGPPKLRITGIDFPQPGFRPAERIIETGSRLAAYAESFNVPFEYNAIAKKWETIQLDELKIDKDEYLIVTCFYRGKNLLDESVVVDSPRNKFLNLIRKINPDLFIHGIMNGAFNAPFFVTRFREALFHFSSLFDMLETIVPREDWERMLIEKEVFGREALNVIACEGCERVERPETYRQWQVRILRAGFLQQPFDRGIVERAIEKVRSTYHKDFVIDEDGQWLLQGWKGRIVYALSCWKSA. 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01883 742 MobiDBLite consensus disorder prediction 275 298 - -
Seca1g01883 742 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 295 733 IPR005202 -
Seca1g01883 742 Pfam GRAS domain family 369 740 IPR005202 -
Seca1g01883 742 ProSiteProfiles GRAS family profile. 360 740 IPR005202 -
Seca1g01883 742 MobiDBLite consensus disorder prediction 275 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01883 Seca-Chr1 36176407 36179367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01883 70 740 GRAS Transcription Factor Family AT2G37650 53.959 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca1g01883 GRAS 1.8e-109 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01883 - - gmx:100801824 1189.1