Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01871 ATGCGGAATTGGGGGAAATGGGTTTCTGAAATCCGTGAGCCAAGGAAGAAATCGAGAATATGGCTAGGGACATTCCCCACACCAGAAATGGCAGCAAGAGCACATGACGTGGCAGCTTTGAGCATCAAAGGAACCTCTGCCATTCTCAACTTCCCTCACCTCGCCACGTGTTTCCCTCGTCCTGCTTCTTTAGCCCCTCGTGATGTTCAAGCAGCTGCTGCAAAAGCTGCTCAAATGGATAACTTCGAATTGCCTTCTTCAACGATGGATGTTTCAAACATATACATTAATTGGATGTTGTATCTTGGTCATTACTGTATATTGTTGAGGTTAGTTGTGTATAACATATTTATAAGTAGAAGAAAGGTTCATGGTTTTCTCAATTATTGTTTACTATTTGTATAA 405 0.4173 MRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTSAILNFPHLATCFPRPASLAPRDVQAAAAKAAQMDNFELPSSTMDVSNIYINWMLYLGHYCILLRLVVYNIFISRRKVHGFLNYCLLFV. 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01871 134 FunFam Ethylene-responsive transcription factor 2 1 53 - -
Seca1g01871 134 Pfam AP2 domain 3 44 IPR001471 GO:0003700|GO:0006355
Seca1g01871 134 Gene3D AP2/ERF domain 1 53 IPR036955 GO:0003700|GO:0006355
Seca1g01871 134 SMART rav1_2 1 58 IPR001471 GO:0003700|GO:0006355
Seca1g01871 134 SUPERFAMILY DNA-binding domain 2 53 IPR016177 GO:0003677
Seca1g01871 134 CDD AP2 1 54 IPR001471 GO:0003700|GO:0006355
Seca1g01871 134 ProSiteProfiles AP2/ERF domain profile. 1 52 IPR001471 GO:0003700|GO:0006355
Seca1g01871 134 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01871 Seca-Chr1 35996817 35997221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01871 1 80 AP2-EREBP Transcription Factor Family AT5G11590 86.250 1.41e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca1g01871 AP2 9.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01871 K09286 - ming:122075956 148.673