Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01869 ATGTCAAAGACAATGATGGAGGAAGTAATGGCTACTTGGTCAGAAGGAGTTTCCATATTGGAAAGGAGTTTGAGTAAGATTGAGAATAAGTATACCCTGAAAATCAAATGCTTTGGCAATGGGATGGGTGATGATGGATATAAGTGGAGAAAGTATGGGCAGAAATCCATTAAGAATAGCCCAAATCCTAGGTAA 195 0.3846 MSKTMMEEVMATWSEGVSILERSLSKIENKYTLKIKCFGNGMGDDGYKWRKYGQKSIKNSPNPR. 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01869 64 ProSiteProfiles WRKY domain profile. 38 64 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g01869 64 SUPERFAMILY WRKY DNA-binding domain 41 64 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g01869 64 Pfam WRKY DNA -binding domain 44 64 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g01869 64 Gene3D WRKY domain 29 64 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g01869 64 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 28 64 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01869 Seca-Chr1 35984131 35985483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01869 17 64 WRKY Transcription Factor Family AT5G43290 75.510 6.77e-18 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca1g01869 WRKY 7.5e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01869 - - gmx:100810459 103.219