Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g01869 | ATGTCAAAGACAATGATGGAGGAAGTAATGGCTACTTGGTCAGAAGGAGTTTCCATATTGGAAAGGAGTTTGAGTAAGATTGAGAATAAGTATACCCTGAAAATCAAATGCTTTGGCAATGGGATGGGTGATGATGGATATAAGTGGAGAAAGTATGGGCAGAAATCCATTAAGAATAGCCCAAATCCTAGGTAA | 195 | 0.3846 | MSKTMMEEVMATWSEGVSILERSLSKIENKYTLKIKCFGNGMGDDGYKWRKYGQKSIKNSPNPR. | 65 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g01869 | 64 | ProSiteProfiles | WRKY domain profile. | 38 | 64 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Seca1g01869 | 64 | SUPERFAMILY | WRKY DNA-binding domain | 41 | 64 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Seca1g01869 | 64 | Pfam | WRKY DNA -binding domain | 44 | 64 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Seca1g01869 | 64 | Gene3D | WRKY domain | 29 | 64 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Seca1g01869 | 64 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 28 | 64 | IPR044810 | GO:0003700 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g01869 | Seca-Chr1 | 35984131 | 35985483 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g01869 | 17 | 64 | WRKY Transcription Factor Family | AT5G43290 | 75.510 | 6.77e-18 | 72.4 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Seca1g01869 | WRKY | 7.5e-08 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g01869 | - | - | gmx:100810459 | 103.219 |