Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01867 ATGGTGGCAAACGATAAAATGGGGAAGGAAAAAAAAGAATGCACACACATATATATATGGTCATGTGGTGTTATCTTGTATGTTATCCTAACAGGATACCTTCCTTTTGATGACAGAAATCTTGCAGTTCTCTATCAAAAGATTTTCAAAGGAGATGTTCAGATACCAAGATGGTTGTCATCTGGTGCCCAAAAAATTATAAAGAGGATTCTTGATCCCAATCCTAAAACCCGGATGTCAATGAACATGATCAAAGAAGATGAATGGTTCATGGAGGGCTATACTCCTGCAATTCCAGATGATGAAGAGGGTGTACACATTGATGATGAAGCTTTTTCCATCCAAGAAGTGGATGTATCTGAGAGGAAGATAAGATTTACATCCAACCATTCACCAAAAGATTTGGCAGAGAAGATTGATGACATTGTAACAGAAATGGGATATAGAGTCCAGAAGAAAAATGGAAAGTTGAAAGTGATACAAGAAAACAGAGCACAGAAAAGTCTAGGTAGCCTCTCAGTGGCAGCAGAGGTGTGTGAGATAGGCCCATCTTTGTATGTAGTAGAACTAAGGAAGTCTTATGGAGATGCTTCTATATATAGACAGTTATGCAAGAAGTTATCAAATGACTTGGGTGTCCTGGGTTCACCCAAGGCACAACTAGTGACTCAGCAGTGA 678 0.3909 MVANDKMGKEKKECTHIYIWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGDVQIPRWLSSGAQKIIKRILDPNPKTRMSMNMIKEDEWFMEGYTPAIPDDEEGVHIDDEAFSIQEVDVSERKIRFTSNHSPKDLAEKIDDIVTEMGYRVQKKNGKLKVIQENRAQKSLGSLSVAAEVCEIGPSLYVVELRKSYGDASIYRQLCKKLSNDLGVLGSPKAQLVTQQ. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01867 225 Gene3D Kinase associated domain 1, KA1 102 214 - -
Seca1g01867 225 ProSiteProfiles Protein kinase domain profile. 1 90 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01867 225 FunFam Non-specific serine/threonine protein kinase 112 214 - -
Seca1g01867 225 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 18 198 - -
Seca1g01867 225 SUPERFAMILY Protein kinase-like (PK-like) 19 100 IPR011009 -
Seca1g01867 225 CDD CIPK_C 116 208 - -
Seca1g01867 225 Gene3D Transferase(Phosphotransferase) domain 1 7 101 - -
Seca1g01867 225 SUPERFAMILY KA1-like 124 212 IPR028375 -
Seca1g01867 225 Pfam Protein kinase domain 11 90 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01867 Seca-Chr1 35922843 35924252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01867 19 223 CBL-interacting serine-threonine protein kinases AT3G17510 57.025 9.87e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca1g01867 Pkinase 3.8e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01867 K07198 - vvi:100259621 304.679