Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01865 ATGAACCTGTTCGTTGCTCTTCTCTGCACTTGCATCATTATTGGTCATTTGTTGGAGGAGAATCGATGGATTAATGAATCCATCACTGCCCTTCTCATTGGTCTCTGTACTGGGGTTTTCATATTGCTTACAACTGGAGGAAAAAGCTCTCATATATTGCTTTTCAGCGAAGATCTTTTCTTTATTTACCTTCTTCCTCCCATCATTTTCAATGCAGGGTTTCAGGTCAAGAAGAAACAATTTTTCCGCAATTTTATGACTATCATGCTCTTTTTTGCAATTGGTACATTGATATCATTTTGTATCATATCACTAGGTAATTTAACTAACTTCAACTCTTCACTTTCTATTTCTAGCTAA 360 0.3583 MNLFVALLCTCIIIGHLLEENRWINESITALLIGLCTGVFILLTTGGKSSHILLFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFFAIGTLISFCIISLGNLTNFNSSLSISS. 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01865 119 PRINTS Na+/H+ exchanger signature 88 96 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca1g01865 119 PRINTS Na+/H+ exchanger signature 73 87 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca1g01865 119 PRINTS Na+/H+ exchanger signature 59 70 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca1g01865 119 PANTHER SODIUM/HYDROGEN EXCHANGER 2 105 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Seca1g01865 119 Pfam Sodium/hydrogen exchanger family 5 107 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01865 Seca-Chr1 35573012 35573570 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01865 1 106 Antiporters AT3G06370 84.906 3.82e-58 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01865 - - gmx:100791224 207.223