Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01851 ATGCTCTCAGCCCCTTATGACATGGGTGGTCTTCCAATCCGGGATGTTGTGGGACAGCCAATGCCTATTCAGGTTTTGGCTACAGCCCTTGCAAATTCTCCTCCTGAACAACAGAGGACTATGCTTGGTGAAGCTTTATACCCGCTAGCAGATCAATTGGAACATGATGCAGCAGCCAAGGTTACAAGCACAATTTTCACAAATGAAGCCTGTTGCAATTGCACCTAA 228 0.4693 MLSAPYDMGGLPIRDVVGQPMPIQVLATALANSPPEQQRTMLGEALYPLADQLEHDAAAKVTSTIFTNEACCNCT. 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01851 75 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 22 75 IPR002004 GO:0003723
Seca1g01851 75 Pfam Poly-adenylate binding protein, unique domain 30 63 IPR002004 GO:0003723
Seca1g01851 75 Gene3D - 18 68 - -
Seca1g01851 75 SUPERFAMILY PABC (PABP) domain 14 62 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01851 Seca-Chr1 34673489 34673716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01851 1 66 Eukaryotic Initiation Factors Gene Family AT1G49760 60.000 1.16e-18 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01851 K13126 - gmx:100784442 118.242