Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01847 ATGAAAAGAGGTAAGATGAAGATCGATGAGGATCTGGGTCCTGATCGTGAAGATGACTTTCAAACTGATGATGAAGAAAATCAGGCACATAGGGTGTTTGAAAATTTGGATGATGATACTGAGTCAGATAATTCACCCCCTTCACGAAATTTGTCTAATGAGGTTGCTGCTAGTCCCTCTTGGCCTCAAAGTTATAGGCAATCTATGGACATGTTAACTACTGTAAGTGTAACACCACCTGGATTCACTCTCCTAAGGAGAGTTAGTTCAGGGAGAGGTTCAGCATTCAAGAGATCTCAAGAATGCCAAACTGATTCTTCTTTAACTATACCTCTTGTTGGAGAGACAATTAGTTCAATCAATCAAGAGGAGACTACCTCAACATCCCATGTGCAATCACTTGTACCTAGCTGTGCAAATTTTTCTATCACTGAATTGCCACCACCACAAGAACAATGTTCATTTGCACAATCAGTAATTAATGGTACCAATATATTATGTGGGATAGGAATTCTTACTATCCCATATGCAGTAAAAGAAGGAGGGTGGTTGAGCCTTATAATACTTCTATTGTTTGCTATCATTTGTTGTTATACTGGGATTTTGTTAAAGAGATGTCTAGAGAACAACACTGGACTCAAATCTTACCCAGATATTGGCCAGGCTGCTTTTGGAATTGTTGGTCGCTTGGTGATTGCGATCCTTTTGTATGTGGAATTGTTTGCTTCATGTGTTGAGTATATAATACTAGTCAGTGATAATCTCGCATCACTTTTTCCTAATACTCACATGAGATTTGCTGGAATTGATTTTGGTACACATCAAATTTTTGCCATTACAGCAGCTGTTCTTGTTCTACCAACAGTTTGGCTGAAAAATCTAAGCCTGCTTTCTTATATTTCAGTTGGAGGAATATTTGCAACAATAACTGTTGCATTATGCTTGTTTTGGGTTGGAGTGATAGATAACCAAGTTGGATCTAAGCCAGGAGGAAAAATTTTAGACCTTTCACACCTATCTGTCTCAATTGGTGTTTTTGGTTTTGGATTTGCTGGCCATGCAGTTTTTCCAAACATTTACTCTTCCATGAAGGAACCATCGAAATTCCCATCAGTTATATGTATCAGGTAA 1131 0.382 MKRGKMKIDEDLGPDREDDFQTDDEENQAHRVFENLDDDTESDNSPPSRNLSNEVAASPSWPQSYRQSMDMLTTVSVTPPGFTLLRRVSSGRGSAFKRSQECQTDSSLTIPLVGETISSINQEETTSTSHVQSLVPSCANFSITELPPPQEQCSFAQSVINGTNILCGIGILTIPYAVKEGGWLSLIILLLFAIICCYTGILLKRCLENNTGLKSYPDIGQAAFGIVGRLVIAILLYVELFASCVEYIILVSDNLASLFPNTHMRFAGIDFGTHQIFAITAAVLVLPTVWLKNLSLLSYISVGGIFATITVALCLFWVGVIDNQVGSKPGGKILDLSHLSVSIGVFGFGFAGHAVFPNIYSSMKEPSKFPSVICIR. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01847 376 MobiDBLite consensus disorder prediction 45 60 - -
Seca1g01847 376 Pfam Transmembrane amino acid transporter protein 153 372 IPR013057 -
Seca1g01847 376 MobiDBLite consensus disorder prediction 23 44 - -
Seca1g01847 376 MobiDBLite consensus disorder prediction 1 60 - -
Seca1g01847 376 PANTHER OS05G0424000 PROTEIN-RELATED 160 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01847 Seca-Chr1 34579022 34581625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01847 6 375 Amino Acid or Auxin Permease AAAP Family AT5G02180 51.282 3.06e-128 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01847 K15015 - cave:132161847 434.106