Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01845 ATGGCGTCGCTGGGATCTTCATTCTGGTGCTACAGATGCAACCGAATCGTTAGGGTTCCAATCGTCGCTGAGCAAGAGCCCTCGTTACTCTGCCCCGATTGCGCTTCCGGTTTCCTTGAAGAAATCCGAAACCCTACCCACTCCGACCACGGCGGCAGCCCAACACACCGCCGGCGAGGCGGCAGCGGTGACCGATCACCTTTCAACCCGGTTATTGTCCTCCGCGGCGGAAACGACGTCGTCTCGCCAGAGAGCCGGAACTTCGAGCTCTATTACAACGACTCCGGTTCAGGTTCCGGTTCGGGATCCGGTCTTCGTCCTTTGCCAGCTACCGTGACGGAGTTTTTAATGGGCTCGGGCTTCGACCTCTTACTGGACCAACTGGCCCAAATGGAAGGAACCGCGGTTCGGTTGGACCGGCCTCCGCCACCGGCCGCGTCAAAAGCCGCGATCGAATCGATGCCGGTCGTGAAAATCATCGCCGATCATGTCCACGCCGAATCTCAGTGCGCCGTTTGTATGGAACCTTTTAAGCTCCATTGCGACGCTCGCGAGATGCCCTGCGGCCACGTGTACCATTCCGATTGCATCGTCCCTTGGCTCTCGTTACGCAACTCGTGCCCGGTGTGCCGCCACGAACTCCCCTCCGCCACCACCGCCACCGACGACTGTGGCGGTGCCGTGGGGCTCACCATATGGAGGCTCCCCGGAGGAGGATTTGCCGTTGGCAGGTTCGTCGGTGGAAGGGAACTTCCTCTTGTGTACACTGAAATGGATGCCGCATTTAACGGTGTTGGTGGTGGTAGTGCTCCTAGGAGGATCTCTTGGGATTCCGCTGTTGTAAGATCGAGGGAGAGAAGAGGAATCGCATTTCGTGGTGCTTTGCGCAATCTCTTTTCGTATTTTCGGAGGGTTAGCAGTTCTTTCTCTCGTTCTTCATCTAGTAATAATAATTCAGCTATGAATGCAAGGTCTCGGTCTACCACAGTTCTTTCTAGATTCTCAAGGAGGGGCTTGTAG 1020 0.5647 MASLGSSFWCYRCNRIVRVPIVAEQEPSLLCPDCASGFLEEIRNPTHSDHGGSPTHRRRGGSGDRSPFNPVIVLRGGNDVVSPESRNFELYYNDSGSGSGSGSGLRPLPATVTEFLMGSGFDLLLDQLAQMEGTAVRLDRPPPPAASKAAIESMPVVKIIADHVHAESQCAVCMEPFKLHCDAREMPCGHVYHSDCIVPWLSLRNSCPVCRHELPSATTATDDCGGAVGLTIWRLPGGGFAVGRFVGGRELPLVYTEMDAAFNGVGGGSAPRRISWDSAVVRSRERRGIAFRGALRNLFSYFRRVSSSFSRSSSSNNNSAMNARSRSTTVLSRFSRRGL. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01845 339 Pfam Ring finger domain 169 211 IPR001841 -
Seca1g01845 339 Pfam zinc-ribbon 7 42 IPR039525 GO:0061630
Seca1g01845 339 SMART ring_2 170 210 IPR001841 -
Seca1g01845 339 MobiDBLite consensus disorder prediction 309 339 - -
Seca1g01845 339 SUPERFAMILY RING/U-box 150 217 - -
Seca1g01845 339 Pfam Protein of unknown function (DUF1117) 228 336 IPR010543 -
Seca1g01845 339 ProSiteProfiles Zinc finger RING-type profile. 170 211 IPR001841 -
Seca1g01845 339 MobiDBLite consensus disorder prediction 43 68 - -
Seca1g01845 339 MobiDBLite consensus disorder prediction 43 63 - -
Seca1g01845 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 217 IPR013083 -
Seca1g01845 339 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 71 215 - -
Seca1g01845 339 FunFam E3 ubiquitin-protein ligase RING1-like 132 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01845 Seca-Chr1 34508461 34509480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01845 107 216 C3H Transcription Factor Family AT5G01980 44.545 8.48e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01845 K11982 - gmx:121172634 386.726