Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01842 ATGTCCCAATCAACCCCAACTCAGGAATTGGTTGCTAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCACGTAGGCACTTGCTCACAACTGGGTGGAGTACTTTTGTGACTTCCAAAAGATTAGTTGCTGGAGATACCTTTGTGTTTCTAAGAGGGAACAATGGGGAATTACGTGTTGGAGTGAGGCGTCTAGCTCCTCTGCAGAACAGCATGCCTTCATCTGTGATTTCTAGTCAGAGCATGCACCTAGGAGTTCTTGCAACTGCATCTCATGCTGTTGCAACTCAGACTCTATTTGTAGTATATTATAAGCCCAGGACAAGCCAGTTCATTGTAAGTGTAAACAAGTATTTGGAAGCAATCAACCAAAAATTTAGTGTTGGCATGAGGTTCAGGATGAGGTTTGAAGGGGATGATTCTGCTGAGACTGACAAAAGATTTTCTGCCACAATAATTGGAGTAGAAGATATGTCTCCCCACTGGGTGAATTCAACATGGAGATCTCTTAAGGTTCAATGGGATGAGCCTGCATCTTTTCCAAGACCTGATAGGGTTTCACCATGGGAGATAGAACCCCTTCTGGCTTCTAATCCTACATCTTCAGTTCAACCTACTGTTGTAAACAATAAAAGGCCTCGGCTACCTAGTGAGGTTCCAGATCTTGACACAACATTAGGTGCCTCTACTTTCTGGGATGCAGGGAGGACACAATCAGATGTAACACAACTTAGTGACCATATGTGGCATCATAAGCAGAGTGATCATAATAGTAAAAACAGTTGCAATGGTATAATGAGGAATCAGACAGAAGGAAGTTGGCTATCTTCTCCCCATTCTAGCGGTCCATCTCATTTATGTCATGACACAACTGATGATAGCAAGAGTGTCTCAGTCTCACCTTGGCCTATTTCAAAAACTCACTCAGAAAGATTGAACAATGATAATTTGCTTGATCATGTTGACAAGGAGAATAAAGTAGAGGCTGCTACAAGCTGTAGATTGTTTGGGATTGAGCTTATTGATCATGCCAGGAACTCTCCTGCTGTGGAAAAGGCACCTTTACATGCAGAAAATGCATCTAGAGTCACTTCTGAGGGCTGTGTTAACACCTTGTCCAGAACTGATGCAGAACATAAGTATGATATCCCAAAGGCTTCTAAAGAAAGGAAACAAGAACAGCAGCAAGTTTCTCCAAAAGAAACTCAAAGCAAGCAAATCTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGTGTTGCAGTGGGTCGTGCTGTGGACTTGACCATGTTGAATGGATATGATCAACTGATAGATGAATTGGAGAAGATGTTTGACATAAAGGGACAGCTTCAACCAAGGAATAAGTGGGAAATTGTGTTCACTGATGATGAAGGGGACATGATGCTTGTGGGGGATGATCCATGGCCTGAATTTTGTAATATGGTGAGAAGGATCTTCATTTGTTCAAGTCAGGATGTGCACAAAATGAGCTCAGGGAGCAAACTGCCTATTTCTTCAATAGAAGAAGAGACTGTAATAAGCTCAGACACAGCTGAGACATGA 1584 0.423 MSQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGNNGELRVGVRRLAPLQNSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLEAINQKFSVGMRFRMRFEGDDSAETDKRFSATIIGVEDMSPHWVNSTWRSLKVQWDEPASFPRPDRVSPWEIEPLLASNPTSSVQPTVVNNKRPRLPSEVPDLDTTLGASTFWDAGRTQSDVTQLSDHMWHHKQSDHNSKNSCNGIMRNQTEGSWLSSPHSSGPSHLCHDTTDDSKSVSVSPWPISKTHSERLNNDNLLDHVDKENKVEAATSCRLFGIELIDHARNSPAVEKAPLHAENASRVTSEGCVNTLSRTDAEHKYDIPKASKERKQEQQQVSPKETQSKQICSRSCTKVQMQGVAVGRAVDLTMLNGYDQLIDELEKMFDIKGQLQPRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVHKMSSGSKLPISSIEEETVISSDTAET. 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01842 527 Gene3D - 131 204 - -
Seca1g01842 527 Pfam B3 DNA binding domain 7 70 IPR003340 GO:0003677
Seca1g01842 527 MobiDBLite consensus disorder prediction 258 306 - -
Seca1g01842 527 ProSiteProfiles PB1 domain profile. 416 497 IPR000270 GO:0005515
Seca1g01842 527 FunFam Auxin response factor 131 204 - -
Seca1g01842 527 Gene3D - 412 504 - -
Seca1g01842 527 Pfam Auxin response factor 96 177 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca1g01842 527 SMART B3_2 1 72 IPR003340 GO:0003677
Seca1g01842 527 MobiDBLite consensus disorder prediction 206 228 - -
Seca1g01842 527 ProSiteProfiles B3 DNA-binding domain profile. 1 72 IPR003340 GO:0003677
Seca1g01842 527 MobiDBLite consensus disorder prediction 379 402 - -
Seca1g01842 527 SUPERFAMILY CAD & PB1 domains 419 492 - -
Seca1g01842 527 SUPERFAMILY DNA-binding pseudobarrel domain 2 99 IPR015300 -
Seca1g01842 527 CDD B3_DNA 8 70 IPR003340 GO:0003677
Seca1g01842 527 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 504 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca1g01842 527 MobiDBLite consensus disorder prediction 358 411 - -
Seca1g01842 527 FunFam Auxin response factor 411 504 - -
Seca1g01842 527 Gene3D - 1 71 IPR015300 -
Seca1g01842 527 MobiDBLite consensus disorder prediction 264 291 - -
Seca1g01842 527 Pfam AUX/IAA family 395 501 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01842 Seca-Chr1 34371549 34376479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01842 1 509 B3 DNA Binding Superfamily AT4G23980 56.420 3.09e-179 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca1g01842 AUX_IAA 1.3e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01842 K14486 - gmx:100779003 825.854