Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01838 ATGTCTGGGAATGGCTTTGCAAAGGTAACTGGTGGATGGATGCCAGATGCAGCAACAGAGAAAGGTGGTGCACTTCCTACTGCTAAAGAGGCTCAAGCAATTGCTAATGATGTTTTCTCACTGTATGTAAGTGAAGAGGTTGATAAAGTTGAGCTTTTGTACACCAAGTTTGTGTCTTTAGTGAAATCAGATCCTATAATTCACACCTTGCTTCCACTCTCACCAAAAGGAGAGATCTGTGATGTGAATGGAAATTGTGTGGATGCTGCTGAGGATGAGTTCTTCAGGTTGACAACAAAGGAAGGGAAGTTAACTGTGCAAAGAGATTCTATGAGGACTAAGACATCAGATTTCTCACCAGTGTTGCAATTTGAGCAGGACCCAGTTCAGATCCTTGATGCACTTTTGCCTCTATATCTCAACAGCCAAATCTTGAGGGCATTGCAGGAGTCACTTGCTGCTAGAATGAGTGCCATGAGTAGAGCTACTGATAATGCAATAGAGTTGAAGAAGAAAGGGTCTACAACATGGAACGCCAGGCTAAGATCACAGGAGAAATTCTGGAAATTGTTGCTGCGTGGAAATCAATCATTCTCCAAAATCACAACAGGAGTGTGGACTACTGTTTGGCTAATCTCCATCTTTAAATACTATCGAGCCCCTGAACTTATATTTGGTGCCACTGAATATACAATTGCCTTAGATATATGGTCAACTGGTTGTGTGATGGCTGAGTTGCTTCTTGGACAGGCAGCTAGGAGGAATATACCCATCTTAATTGATGCAGAAAGGCAAAGGGAAGGGTGGGATAATCTCCTGAAATTAGCTGATTATGTCGGGAAACAACGACGGTTCACAAAGCAACCGTCGTTGTTTCCTAGACATACAACGACGGTTCCAACTTCAACCGTCATTGTTTCTGACTTATAA 930 0.4258 MSGNGFAKVTGGWMPDAATEKGGALPTAKEAQAIANDVFSLYVSEEVDKVELLYTKFVSLVKSDPIIHTLLPLSPKGEICDVNGNCVDAAEDEFFRLTTKEGKLTVQRDSMRTKTSDFSPVLQFEQDPVQILDALLPLYLNSQILRALQESLAARMSAMSRATDNAIELKKKGSTTWNARLRSQEKFWKLLLRGNQSFSKITTGVWTTVWLISIFKYYRAPELIFGATEYTIALDIWSTGCVMAELLLGQAARRNIPILIDAERQREGWDNLLKLADYVGKQRRFTKQPSLFPRHTTTVPTSTVIVSDL. 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01838 309 Gene3D - 2 159 - -
Seca1g01838 309 Gene3D Transferase(Phosphotransferase) domain 1 216 250 - -
Seca1g01838 309 PANTHER ATP SYNTHASE GAMMA CHAIN 20 188 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca1g01838 309 Pfam Protein kinase domain 216 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01838 309 Pfam ATP synthase 24 178 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca1g01838 309 PRINTS ATP synthase gamma subunit signature 146 165 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca1g01838 309 PRINTS ATP synthase gamma subunit signature 48 65 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca1g01838 309 SUPERFAMILY Protein kinase-like (PK-like) 217 254 IPR011009 -
Seca1g01838 309 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 21 178 IPR035968 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01838 Seca-Chr1 34301400 34305563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01838 3 178 Primary Pumps ATPases AT1G15700 66.111 9.24e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca1g01838 ATP-synt 4.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01838 K02115 - mnt:21396694 266.159