Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01826 ATGTCCTTCAAGCTTGTGTGGGTGTTGTTTCTGGTGACAGTAGTAGCCAGTGAAGGTAGCAGTTTCACCTATCATGGGTTCCAATCAGCTCATTTGTATCTTGATGGTGTTGCTGAAATCACTTCCAATGGCCTGCTCAGACTCACCAATGACACCAAGCAACAAAAGGGTCATGCTTTCTACCCAAATCCTATAGTTTTCAAGAACACCTTCAATGGAAGTGTGTCTTCTTTTTCCACCACTTTTGTCTTTGCCATAAGATCTGAGTATTCAACTCTGAGTGGTCATGGGATTGTATTTGTGGTTTCTCCAACAAAAGGGCTTCCAGATTCTCTTCCAAGCCCGTACCTTGGCCTCTTTAATGAGGCTAACAACGGCAACAGCAGCAACCATGTTTTCGGTGTGGAACTTGATACCATTCAGAGCAATGAGTTTGGTGATATCAATGACAACCATGTTGGAATTGACATCAATGACTTGAGGTCAGCTAATTCATCACCTGCAGGATATTACAGCACTGGTGGGTTAAAGAATTTGACCCTTTTCAGTGGCTATCCTATGCAGGTGTGGGTGGAATATGATGGGGAAAAGGAGCAGATTGATGTTACTTTAGCTCCAATCAATGTTGATAAACCAGAACGCCCTTTGTTATCATTGACCAAAGATCTTTCTCCAATTCTGAACAATAGCATGTATGTTGGATTCTCATCCTCTACTGGCTCAGTCCATACTTCCCATTATGTTCTTGGTTGGAGCTTTAAGGTGAATGGCAAAGCTCAACAACTTGTAATCTCTGAACTCCCCAAGCTTCCTAAACTTGGTGACAAAAAGGAGTCAAAGCTTTTAACCATTGGATTGCCTATGATATCACTCTGTTTGGTTGGTTATGTCATTAAAAGGAAGAAGAAGTTTGCTGAGCTGCTTGAAGATTGGGAACAGGAATACGGCCCACATAGATTCAAGTTCAAAGATCTTTACTTTGCCACAAAGGGGTTCAGGGAGAAGGAACTATTGGGAACTGGTGGATTTGGTAGAGTCTACAAAGGTGTGATGCCAATTTCAAAACTTGAGGTTGCAGTGAAGAGGGTGTCCCATGAATCCAGACAAGGGATGATAGAATTTGTGTCAGAAATTGTTAGTATTGGTCGTCTTCGCCACAGGAATCTGGTTCCTCTTCTTGGCTACTGCAGGCGTAAAGGAGAGTTGCTTTTGGTCTATGATTACATGTCAAATGGAAGCCTAGACAGGTATCTCTATAACCAACCAAGAATGACTCTGAATTGGAGCCAGAGATTTACAATCATCAAAGGGGTTGCTTCAGGTTTGTTTTATTTACATGAAGAATGGGAGCAAGTTGTGGTACACAGAGACATTAAGGCTAGCAATGTATTGCTAGATGCAGAATTGAATGGTAGATTAGGGGATTTTGGTCTTGCAAGGTTGTATGACCATGGAACTGATCCTCAAACTACCCATGTGGTTGGAACTCTTGGGTATCTTGCCCCTGAGCATGCTAGAACAGGTAAGGCAACTACAAGCTCTGATGTGTTTGCTTTTGGTGCATTTCTGTTGGAGGTTGCTTGTGGTAAGAGGCCCATAGAGCACATAGGAGAAAGTGAGACTGTAGTTCTGGTTGATTGGGTTTTTGATTGCTGGAAAAAGGGTGAGATTCTTGAGGCAAAGGATACAAATTTGGGCACAGATTATAGGCCAGAGGAGCTGGAGTTGGTATTGAAACTTGGTTTGTTGTGCTCACATTCAGACCCATTGGTTAGGCCAAGCATGCGCCTAGTTGTGCAGTACTTGGGAATGGATGTTCCTCTGCCAGATTTATCTTCGCTTAGCTTATCTTCCACTGGCTTAACCTTTGGGCACCATTATGAAGATTTTGAGAACTTTCCTATGTCCTATCCTGTATCTGGGGGTAAGCCATTCTCCCATAGTACCTATACCTCAACTTCAGCTGCTGAATCACTTCTCTCTGGTGGTCGTTAA 1995 0.4291 MSFKLVWVLFLVTVVASEGSSFTYHGFQSAHLYLDGVAEITSNGLLRLTNDTKQQKGHAFYPNPIVFKNTFNGSVSSFSTTFVFAIRSEYSTLSGHGIVFVVSPTKGLPDSLPSPYLGLFNEANNGNSSNHVFGVELDTIQSNEFGDINDNHVGIDINDLRSANSSPAGYYSTGGLKNLTLFSGYPMQVWVEYDGEKEQIDVTLAPINVDKPERPLLSLTKDLSPILNNSMYVGFSSSTGSVHTSHYVLGWSFKVNGKAQQLVISELPKLPKLGDKKESKLLTIGLPMISLCLVGYVIKRKKKFAELLEDWEQEYGPHRFKFKDLYFATKGFREKELLGTGGFGRVYKGVMPISKLEVAVKRVSHESRQGMIEFVSEIVSIGRLRHRNLVPLLGYCRRKGELLLVYDYMSNGSLDRYLYNQPRMTLNWSQRFTIIKGVASGLFYLHEEWEQVVVHRDIKASNVLLDAELNGRLGDFGLARLYDHGTDPQTTHVVGTLGYLAPEHARTGKATTSSDVFAFGAFLLEVACGKRPIEHIGESETVVLVDWVFDCWKKGEILEAKDTNLGTDYRPEELELVLKLGLLCSHSDPLVRPSMRLVVQYLGMDVPLPDLSSLSLSSTGLTFGHHYEDFENFPMSYPVSGGKPFSHSTYTSTSAAESLLSGGR. 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01826 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Seca1g01826 664 PANTHER - 27 606 - -
Seca1g01826 664 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 274 IPR013320 -
Seca1g01826 664 SUPERFAMILY Protein kinase-like (PK-like) 313 605 IPR011009 -
Seca1g01826 664 ProSiteProfiles Protein kinase domain profile. 332 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01826 664 SMART serkin_6 332 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01826 664 CDD lectin_legume_LecRK_Arcelin_ConA 21 257 IPR001220 GO:0030246
Seca1g01826 664 Gene3D Phosphorylase Kinase; domain 1 294 408 - -
Seca1g01826 664 Pfam Protein kinase domain 332 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01826 664 FunFam Lectin-domain containing receptor kinase A4.3 317 408 - -
Seca1g01826 664 Gene3D Transferase(Phosphotransferase) domain 1 409 613 - -
Seca1g01826 664 ProSitePatterns Protein kinases ATP-binding region signature. 338 361 IPR017441 GO:0005524
Seca1g01826 664 Gene3D - 19 268 - -
Seca1g01826 664 Pfam Legume lectin domain 20 267 IPR001220 GO:0030246
Seca1g01826 664 FunFam L-type lectin-domain containing receptor kinase V.9 19 260 - -
Seca1g01826 664 FunFam L-type lectin-domain containing receptor kinase S.4 409 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01826 Seca-Chr1 33908856 33910871 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01826 16 664 Receptor kinase-like Gene Family AT2G37710 65.303 0.0 846
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca1g01826 Pkinase 2.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01826 - - gmx:100783815 1011.91