Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01825 ATGTCCTTCAAGCTTGTGTGGGTGTTTTTTCTTGTGACAGTGGTAGCCAGTGAGGATAGCAGTTTCACCTATAATGGGTTTCAATCAACTCATTTGTATCTTGATGGTATTGCTGAGATCACCTCCAATGGCCTGCTTAGACTCACCAATGACACCAAACAAGAAAAGGGTCATGCTTTCTACCCAAATCCTATAGTTTTCAAGAACACCTTCAATGGAACTGTGTCTTCTTTTTCCACCACTTTTGTATTTGCCATAAGACCTGAGTATCCAAATCTGAGTGGTCATGGGATTGTTTTTGTGGTTTCCCCAACAAAAGGGCTTCCAGATTCTCTTCCAAGTCAGTACCTTGGCCTCTTTAATGAGGCTAACAACGGCAACAGCAACCATGTTTTCGGTGTGGAACTTGATACCATTCAGAGCAGTGAGTTTGGAGATATCAATGACAACCATGTTGGAATTGATATCAATGACTTGAGGTCAGCTAATTCATCACCTGCAGGATATTATAGCACTAGTGGGTTAAAGAATTTGACCCTTTTCAGTGGCTATCCTATGCAGGTGTGGGTGGAATATGATGGAGAAAAGAAGCAGATTGATGTTACTTTAGCTCCAATCAATGTTGATAAACCAGAACTCCCTTTGTTATCATTGACCAAAGATCTTTCTCCAATTCTGAACAATAGCATGTATGTTGGGTTCTCATCCTCTACTGGCTCAGTTCATACTTCCCATTATGTTCTTGGTTGGAGCTTTAAGGTGAATGGCAAAGCTCAACAACTTGTAATCTCTGAACTCCCCAAGCTTCCTAAACTTGGTGACAAAAAGGAGTCAAAGCTTTTAACCATTGGATTGCCTATGATATCACTCTGTTTGGTTGGTTATGTCATTAAAAGGAAGAAGAAGTTTGCTGAGCTGCTTGAAGATTGGGAACAGGAATACGGCCCACATAGATTCAAGTTCAAAGATCTTTACTTTGCCACAAAGGGGTTCAGGGAGAAGGAACTATTGGGAACTGGTGGATTTGGTAGAGTCTACAAAGGTGTGATGCCAATTTCAAAACTTGAGGTTGCAGTGAAGAGGGTGTCCCATGAATCCAGACAAGGGATGATAGAATTTGTGTCAGAAATTGTTAGTATTGGTCGTCTTCGCCACAGGAATCTGGTTCCTCTTCTTGGCTACTGCAGGCGTAAAGGAGAGTTGCTTTTGGTCTATGATTACATGTCAAATGGAAGCCTAGACAGGTATCTCTATAACCAACCAAGAATGACTCTGAATTGGAGCCAGAGATTTACAATCATCAAAGGGGTAGCTTCAGGTTTGTTTTATTTACATGAAGAATGGGAGCAAGTTGTGGTACACAGAGACATTAAGGCTAGCAATGTATTGCTAGATGCAGAATTGAATGGTAGATTAGGGGATTTTGGTCTTGCAAGGTTGTATGACCATGGAACTGATCCTCAAACTACCCATGTGGTTGGAACTCTTGGGTATCTTGCCCCTGAGCATGCTAGAACAGGTAAGGCAACTACAAGCTCTGATGTGTTTGCTTTTGGTGCATTTCTGTTGGAGGTTGCTTGTGGTAAGAGGCCCATAGAGCACATAGGAGAAAGTGAGACTGTAGTTCTGGTTGATTGGGTTTTTGATTGCTGGAAAAAGGGTGAGATTCTTGAGGCAAAGGATACAAATTTGGGCACAGATTATAGGCCAGAGGAGGTGGAGTTGGTATTGAAACTTGGTTTGTTGTGCTCACATTCAGACCCATTGGTTAGGCCAAGCATGCGCCTAGTTGTGCAGTACTTGGGAATGGATGTACCTCTGCCAGATTTATCTTCGCTTAGCTTATCTTCCACTGGCTTAACCTTTGGGCACCATTTTGAAGATTTTGAGAACTTTCCAATGTCCTATCCTGTATCTGGGGATAAGCCATTCTCTCATAGTACCTATTCCTCAACTTCAGCTGCTGAATCACTTCTCTCTGGTGGTCGTTGA 1992 0.4227 MSFKLVWVFFLVTVVASEDSSFTYNGFQSTHLYLDGIAEITSNGLLRLTNDTKQEKGHAFYPNPIVFKNTFNGTVSSFSTTFVFAIRPEYPNLSGHGIVFVVSPTKGLPDSLPSQYLGLFNEANNGNSNHVFGVELDTIQSSEFGDINDNHVGIDINDLRSANSSPAGYYSTSGLKNLTLFSGYPMQVWVEYDGEKKQIDVTLAPINVDKPELPLLSLTKDLSPILNNSMYVGFSSSTGSVHTSHYVLGWSFKVNGKAQQLVISELPKLPKLGDKKESKLLTIGLPMISLCLVGYVIKRKKKFAELLEDWEQEYGPHRFKFKDLYFATKGFREKELLGTGGFGRVYKGVMPISKLEVAVKRVSHESRQGMIEFVSEIVSIGRLRHRNLVPLLGYCRRKGELLLVYDYMSNGSLDRYLYNQPRMTLNWSQRFTIIKGVASGLFYLHEEWEQVVVHRDIKASNVLLDAELNGRLGDFGLARLYDHGTDPQTTHVVGTLGYLAPEHARTGKATTSSDVFAFGAFLLEVACGKRPIEHIGESETVVLVDWVFDCWKKGEILEAKDTNLGTDYRPEEVELVLKLGLLCSHSDPLVRPSMRLVVQYLGMDVPLPDLSSLSLSSTGLTFGHHFEDFENFPMSYPVSGDKPFSHSTYSSTSAAESLLSGGR. 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01825 663 CDD STKc_IRAK 337 601 - -
Seca1g01825 663 Gene3D Transferase(Phosphotransferase) domain 1 408 612 - -
Seca1g01825 663 ProSiteProfiles Protein kinase domain profile. 331 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01825 663 FunFam L-type lectin-domain containing receptor kinase V.9 19 259 - -
Seca1g01825 663 Pfam Legume lectin domain 20 266 IPR001220 GO:0030246
Seca1g01825 663 Pfam Protein kinase domain 331 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01825 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Seca1g01825 663 SUPERFAMILY Protein kinase-like (PK-like) 312 604 IPR011009 -
Seca1g01825 663 FunFam Lectin-domain containing receptor kinase A4.3 316 407 - -
Seca1g01825 663 PANTHER - 27 605 - -
Seca1g01825 663 Gene3D Phosphorylase Kinase; domain 1 293 407 - -
Seca1g01825 663 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 273 IPR013320 -
Seca1g01825 663 SMART serkin_6 331 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01825 663 CDD lectin_legume_LecRK_Arcelin_ConA 21 256 IPR001220 GO:0030246
Seca1g01825 663 ProSitePatterns Protein kinases ATP-binding region signature. 337 360 IPR017441 GO:0005524
Seca1g01825 663 Gene3D - 18 267 - -
Seca1g01825 663 FunFam L-type lectin-domain containing receptor kinase S.4 408 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01825 Seca-Chr1 33895562 33897574 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01825 16 663 Receptor kinase-like Gene Family AT2G37710 65.909 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca1g01825 Pkinase 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01825 - - gmx:100783815 1028.08