Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01822 ATGTTTCCCAAGCTTGTAATAGTGCTATTTTTGCTTGTGACAGTGGTAGCCAGTGAAGATAGCAGTTTCACATATAATGGATTCCAATCAGCTCATTTGTATCTTGATGGTAATGCTGACTTCACCTCTAATGGCCTACTCAGACTCACCAATGACACCAAGCAACAAAAGGGTCATGCTTTCTACCCAAATCCTATAGTTTTCAAGAACACCTTCAATGGAAGTGTGTCCTCTTTTTCCACCTCTTTTGTCTTTGCCATAAGATCTGAGTATCCAACTCTGAGTGGTCATGGGATTGTATTTGTGGTTTCCCCAACAAAAGGGCTTCCAGATTCTCTTCCAAGCCAGTACCTTGGCCTTTTCAATGAGATAAACAATGGCAACAACAGCAACCATGTTTTTGGGGTGGAACTTGATACCATTCAGAACAGCGAGTTTGCTGACATCAATGACAACCATGTTGGAATTGATATCAATGGCTTAAAGTCAGCTAAATCAGCTCCTGCAGGGTATTACATTGGTGGTGTGTTTAAGAATTTGAGCCTTTTCAGTGGCTATCCAATGCAGGTATGGGTGGAATATGATGGGGAAAAGAAGCAGATTGATGTTACTTTAGCTCCAATCAATGTTGATAAACCAGAACACCCTTTGTTATCATTGACCAAAGATCTTTCTCCTATTCTGAACAATAGCATGTATGTTGGTTTGTCATCCTCTACAGGGTCAGTTCTAACTTCACATTATGTTCTTGGTTGGAGCTTTAAGGTCAATGGCAAAGCTCAACAACTTGTAATGTCTGAACTCCCCAAGCTTCCTAGACTTGGTGATAAACAAGAGTCTATGGTTTTATTTGTTGGGTTGCCTCTGATATCTCTCAGTTTGATTCTCATGGTAGTTCTAGCAGTGGTTCATGTCACCAAAAGGAAGAAGTTTTCTGAGCTGCTTGAAGATTGGGAGCAGGACTATGGTCCTCATAGATTCAAGTACAAAGATCTTTACTTTGCCACAAAGGGGTTCAGGGAGCAGGAGTTATTGGGAAGTGGTGGGTTTGGTAGAGTTTACAAAGGTGTGATGCCAATTTCCAAAATTGAGGTTGCAGTGAAGAGGGTGTCCCATGAATCCAGACAAGGGATAAGGGAATTTGTGGCAGAAATTGTTAGCATTGGTCGTCTTCGCCACAGGAATCTGGTTCCTCTTCTTGGATATTGCAGGCGCAAAGGAGAGTTGCTTTTGGTCTATGATTACATGCCAAATGGAAGCCTAGACAAGTATCTCTATAACCAACCTAGAGTGACCCTGAATTGGAGCCAGAGATTTACCATCATCAAAGGGGTTGCTTCGGGTTTGTTTTATTTACATGAAGAATGGGAGCAAGTTGTGGTACACAGAGACATTAAGGCTAGCAATGTACTACTAGATACAGAATTGAATGGTAGATTAGGGGATTTTGGTCTTGCAAGGTTATATGACCATGGAACTGATCCTCAAACTACCCATGTGGTTGGAACTGTTGGGTATCTGGCCCCTGAGCATACTAGAACAGGTAAGGCAACTACAAGCTCTGATGTGTTTGCTTTTGGTGCATTTCTGTTGGAGGTTGCTTGTGGAAGGAGGCCTATTGAGAAAGTAGGTGAATGTGAAAGTGAGAGTGCAATTCTTGTTGATTGGGTGTATGATTGCTGGAAAAGAGGTGAGATTCTTGAGGCAAAGGATCCAAATTTGGGCACAGATTATAGGCCAGAGGAGGTGGAACTGGTTTTAAAACTTGGTTTGTTGTGCTCACATTCAGAGCCATTGGCTAGACCAAGCATGCGCCAAGTTGTGCAGTACTTGGACAGGGATGTGCCTCTGCCAGATATGTCTTTGCTTAGCTTATCTTCCAGTGGCTTAACTTTTGGGCACCATGAAAATTTTCAGGACTATCCAATGTCCTATCCATCTTCTATAGATAGGCCTTTCTCCCATACTTCTTCAATTGCAGAATCACTTCTCTCTGGTGGTCGTTGA 2007 0.4235 MFPKLVIVLFLLVTVVASEDSSFTYNGFQSAHLYLDGNADFTSNGLLRLTNDTKQQKGHAFYPNPIVFKNTFNGSVSSFSTSFVFAIRSEYPTLSGHGIVFVVSPTKGLPDSLPSQYLGLFNEINNGNNSNHVFGVELDTIQNSEFADINDNHVGIDINGLKSAKSAPAGYYIGGVFKNLSLFSGYPMQVWVEYDGEKKQIDVTLAPINVDKPEHPLLSLTKDLSPILNNSMYVGLSSSTGSVLTSHYVLGWSFKVNGKAQQLVMSELPKLPRLGDKQESMVLFVGLPLISLSLILMVVLAVVHVTKRKKFSELLEDWEQDYGPHRFKYKDLYFATKGFREQELLGSGGFGRVYKGVMPISKIEVAVKRVSHESRQGIREFVAEIVSIGRLRHRNLVPLLGYCRRKGELLLVYDYMPNGSLDKYLYNQPRVTLNWSQRFTIIKGVASGLFYLHEEWEQVVVHRDIKASNVLLDTELNGRLGDFGLARLYDHGTDPQTTHVVGTVGYLAPEHTRTGKATTSSDVFAFGAFLLEVACGRRPIEKVGECESESAILVDWVYDCWKRGEILEAKDPNLGTDYRPEEVELVLKLGLLCSHSEPLARPSMRQVVQYLDRDVPLPDMSLLSLSSSGLTFGHHENFQDYPMSYPSSIDRPFSHTSSIAESLLSGGR. 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01822 668 CDD STKc_IRAK 345 613 - -
Seca1g01822 668 ProSitePatterns Protein kinases ATP-binding region signature. 345 368 IPR017441 GO:0005524
Seca1g01822 668 PANTHER - 17 616 - -
Seca1g01822 668 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 275 IPR013320 -
Seca1g01822 668 ProSiteProfiles Protein kinase domain profile. 339 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01822 668 Pfam Legume lectin domain 21 268 IPR001220 GO:0030246
Seca1g01822 668 Pfam Protein kinase domain 340 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01822 668 Gene3D Phosphorylase Kinase; domain 1 324 415 - -
Seca1g01822 668 SUPERFAMILY Protein kinase-like (PK-like) 320 625 IPR011009 -
Seca1g01822 668 SMART serkin_6 339 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01822 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Seca1g01822 668 Gene3D - 19 269 - -
Seca1g01822 668 Gene3D Transferase(Phosphotransferase) domain 1 416 623 - -
Seca1g01822 668 FunFam L-type lectin-domain containing receptor kinase V.9 20 261 - -
Seca1g01822 668 FunFam Lectin-domain containing receptor kinase A4.3 324 415 - -
Seca1g01822 668 FunFam L-type lectin-domain containing receptor kinase S.4 416 624 - -
Seca1g01822 668 CDD lectin_legume_LecRK_Arcelin_ConA 22 258 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01822 Seca-Chr1 33828474 33830480 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01822 17 668 Receptor kinase-like Gene Family AT2G37710 66.006 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca1g01822 Pkinase 2.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01822 - - gmx:100783815 1092.8