Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01800 ATGTTCACACCGGCCTCTCCTCAAGCCACGGTCTCCGGCATCGTCGCTGCTCGTGGAATCCACCATCACCGGCGTCGCCTTTGTCTCAGATTCTCTAGGAGACAAGGAAACGTTGTTGTCGTTGCTTGTTCTGCTCGAAGTCCTCGTTCTGCTCTTAAGCCCCCTTCTTCTCCTCTTTCTGATTCCCTCTTTCTCTCTAAGTTTGGTTCTGTTTCCCCTTTTTATGTTTTCAGTTCTCACTATTTCTCATTTTATTTTGGCACAGGTGGTGGGGGTGAGGACAATCAGCCACAATCTTTTAGAAGCTGCAAGATAGCCAGGCTAGCTCTTGATGCTAACAATGTCAGATCAGCCATTGGAGATAGGATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTTGCATGTACTGCAGGGTTTGTATTGCAGTGGCGCCTTTCCGTTGTCCTTGTAGCTGTGTTCCCTGTTGTGGTTATAGCCACTGTTTTACAGAAAATGTCCATGACTGGTTTCTCTGGTGACCTGGAAGCTGCTCATGCCAAGGCCACACAACTAGTGGTTCAATTCCAATCAGTTTGCAATGTTGACTTGTCAGCTCTAAGGCCCTTGCCTATTGATGTCCAAGGTGTGCAGGCAGCTCATTGTGTTGTGTATTTGATTCAACCATTTGATGGTTAA 681 0.467 MFTPASPQATVSGIVAARGIHHHRRRLCLRFSRRQGNVVVVACSARSPRSALKPPSSPLSDSLFLSKFGSVSPFYVFSSHYFSFYFGTGGGGEDNQPQSFRSCKIARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLSVVLVAVFPVVVIATVLQKMSMTGFSGDLEAAHAKATQLVVQFQSVCNVDLSALRPLPIDVQGVQAAHCVVYLIQPFDG. 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01800 226 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 105 189 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g01800 226 Pfam ABC transporter transmembrane region 106 188 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g01800 226 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 105 188 IPR039421 -
Seca1g01800 226 SUPERFAMILY ABC transporter transmembrane region 105 189 IPR036640 GO:0005524|GO:0016020
Seca1g01800 226 Gene3D ABC transporter type 1, transmembrane domain 95 195 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01800 Seca-Chr1 33010343 33017145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01800 95 196 Calmodulin-binding Proteins AT2G36910 77.451 1.19e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01800 K05658 - gmx:100817829 138.658