Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01799 ATGTCTTATTGCTACTTCCCCTTTACTTGCCAGGGAAAGATGGAGTTCAATGCCCAAAACTCCAATAAATCTGAGCAAATAAGATGGAACTCAGATGATGTAGGTGGTCCTGGCCAAGTTAAATCTTATTCTTGTAACTTTTGCAAGAGAGGGTTCTCAAATGCACAAGCACTAGGAGGCCACATGAATATCCATAGAAGAGATAGAGCCAAGCTCAAGCAATCTTCTGAAGAAAACTTGCTTTCTTTGGATATCTCAATCAAGAATTCAAGTGATGAGGAAGAGAATAATCAACCACCTCAAAGGGGAAAGTCCATTGGTAAAACAGAACTTTCTCATATTCCACCATTTGTTGCTACCAATAGTGTTGCGGTACAGAGGATTGAAGAGAAGAAAGCTGATTTAGATCTTGAGCTTAGGTTAGGGTTTGAGCCACAGGAGTCACCAACATTGAGCACCAGATCCTTCTTTTGA 474 0.4051 MSYCYFPFTCQGKMEFNAQNSNKSEQIRWNSDDVGGPGQVKSYSCNFCKRGFSNAQALGGHMNIHRRDRAKLKQSSEENLLSLDISIKNSSDEEENNQPPQRGKSIGKTELSHIPPFVATNSVAVQRIEEKKADLDLELRLGFEPQESPTLSTRSFF. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01799 157 PANTHER OS07G0101800 PROTEIN 23 104 - -
Seca1g01799 157 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Seca1g01799 157 Gene3D Classic Zinc Finger 15 103 - -
Seca1g01799 157 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Seca1g01799 157 MobiDBLite consensus disorder prediction 85 111 - -
Seca1g01799 157 SUPERFAMILY beta-beta-alpha zinc fingers 41 69 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01799 Seca-Chr1 33005794 33006267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01799 39 150 C2H2 Transcription Factor Family AT3G53820 39.837 7.97e-19 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca1g01799 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01799 - - ccaj:109793777 203.371