Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01797 ATGATAACTTATATTTTCAACATTACTAATCAATTCGAGAAAATTATTTTAATTTGTCTTTTGCATTTCCATATTTTGAGTTCCCAGAGATTCACAAGAAAAATGGCAGAAACAAAGTTGAACTTCAAAGATAAAAGATGGTCACTTTATGGAATGAAAGCTCTAGTGACCGGAGGAACCCGAGGCATAGGGAATACAATTGTTGAAGAGTTAGCAGAATTTGGGGCAGCTATTCACATATGTGCACGTAATCAAGAAGACATTAACAAATGTTTGGAAGAGTGGAAAAGTAAGGGATTTCGCGTCACAGGCTTATTATTCCATCTAAACATGTCATCTGAAAATGTTGATTGGAAACCAAAGCTTGGTATGGAGTTTGAAAATGAAGAAGCAGCATGGGTATTTTGGCGTGAATATGGTGAGAAAGAAGGTTTTGGAGTTAGAAGACAATATGCTAACAAGAGAAAGGGAGACGGTGCTATAACTTCTTGTAGATATGTTTGCTGCAAGGAAGGGTATCGAAAGCCCGATAAAAGAGATGGACAGGTAACCAAGCATAGAGCTAAGACTAGAACTAATTGTTTTGCAAGAGTTGGATTGTCTCTATCAAAGAATGAAAAATTTGTAATACATGACTTTGTAGAAGAACATAACCATCCATTACAACTTCCAGAGACAACTCACATGCTTGCTTCACACCGTGAGATAACTGAAGTTCAAGCTTATGAGATTGATTTGGCTGAAGACTCTGGATTGCGACAAAAGTCATCATTTCAGTTTAGGAGCACACATGCAGGGCATAGAGCTAATGTTGGATATACTCGGTTGGATGCAAAGAATTACCTCAAGGCAAAAAGACAAAGAAGTATGGTGTATGGGGAAGTAGGTTGTCTAATGCAATATTTCCAGCAGCAATTGTTAGTGAACCCATCATTTTTCCATGCATTCCAAATGGATGTCGAAGAGCAAATCACTAATGTATTTTGGGCTGATGCGAAAATGGTGTTGGATTATGGGTATTTTGGTGATGTTGTCTCTCTAGACACTACATATTGTACCAATCGAGCAAATAGACCGCTTGCATTGTTTTCGGTTTTTAACCATTATAGGGGTCTGACACCCTTCTACCCCATACTCTTATACAGTTAA 1149 0.3777 MITYIFNITNQFEKIILICLLHFHILSSQRFTRKMAETKLNFKDKRWSLYGMKALVTGGTRGIGNTIVEELAEFGAAIHICARNQEDINKCLEEWKSKGFRVTGLLFHLNMSSENVDWKPKLGMEFENEEAAWVFWREYGEKEGFGVRRQYANKRKGDGAITSCRYVCCKEGYRKPDKRDGQVTKHRAKTRTNCFARVGLSLSKNEKFVIHDFVEEHNHPLQLPETTHMLASHREITEVQAYEIDLAEDSGLRQKSSFQFRSTHAGHRANVGYTRLDAKNYLKAKRQRSMVYGEVGCLMQYFQQQLLVNPSFFHAFQMDVEEQITNVFWADAKMVLDYGYFGDVVSLDTTYCTNRANRPLALFSVFNHYRGLTPFYPILLYS. 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01797 382 Gene3D - 33 116 - -
Seca1g01797 382 Pfam short chain dehydrogenase 54 109 IPR002347 -
Seca1g01797 382 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 105 IPR036291 -
Seca1g01797 382 PANTHER OS01G0519700 PROTEIN 111 364 - -
Seca1g01797 382 Pfam FAR1 DNA-binding domain 135 222 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01797 Seca-Chr1 32897640 32899495 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01797 43 104 Miscellaneous Gene Families AT1G07440 59.677 8.90e-21 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g01797 FAR1 7.9e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01797 - - aprc:113870350 414.461