Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01780 ATGGAAGCCACTTCTATAACACAGTTGTTGAAGGGCTTTTGTGATAATACACAATGGGAATATGCTGTCTTTTGGAAGCTTAACCACCATTTTCCAATGACTTTGGCCTGGGAAAGTGGTTACCAGAAGAGAAATGAGGCTGTCGAAAGTATGTGGGATTTCAAATCACCAGATGAGGTATATTCTTCAAGCAGTGATAGCAGTGATGATTCAGGAGAATATTCAGCTCGACTACTCATGGTTGAAATGTCTAATCGTAAATACAGTTTGGGAGAAGGGGTTGTTGGCAGAATAGCCCTTGCCGGTGATCATTGTTGGGTTTTCTGTGAGGATATTCTCACCAGTAAATTTGACACTGATTTGATTCCTGAGTGTCCTGATGAGTGGCTACTTCAATTTGCATCTGGCATCAAGACTATTGTGCTGGTACCAGTTCTTCCACAAGGGGTTTTACAGTTTGGTTCATTTGAAGTGGTTGCTGAAGACCTGGAATTTGTTACCAATGTCAAGGAGAAATTCCATTACATTCATTGTCTGGAAGCTAATACTACACCTGTGAACTTGGGAATTGATTATCAAGATTGGTCATTCTCAGCCCTATCACATAATTTGATGGATAGCTTGGACGAGTCCTCATCTATTACAAATAATCTATTGAAAGGTGAAGTCTCAGATAGTACTGCACTCAATGTAAATGAATCAAGGTTGAACCAAAAAATGCTATCATTTCAGGATGACTATTACTTGTCTAGAGAAAATCAGCTAAAATATCTCAACAGAGCAAATGACAATGACATAAGTTGCTCATCAATTGAGATATCAATTGATCCAAGACATAATGGTCAGGTGGAGACAAAATTAAATTATATGGAAGCAGAGATATGGGCCTGGTCTCACTTGGTCAACAGTGTGGGAGTGGATGGAGACATTTCAAGTGGATTAGGCCCTTACTCTGGTAAAAATATGACACATCAACAATTTGGAGCCGTTGAAGTTGGTCATGAACATGATGATGTTAAGAATGTCAATGACTTCAGTTTTCCCTCAGAGTCTGAATTGCATAAAGCACTTGGATCAGTTGCATATAGACAGACAGGCAAATCTATGTCTAAATATATCTCTGTTGAAGAGACATACAGTAGCTCAACTTTAAAATCCAATACAAAAGAGCATGATCAAGTTAAATGTTTGGAGTTTTCTGAAGAAGTTGATCCAGAATTTCTTTTGGATGCTATTATTGGCAATTTATGCAGTACCTCGGATGATACTTCACATATATCCAACAGTGTTAGGTCTCTTACAACCATGCCAATAAAGTTTACTGGTTCCATTCAACCAAAAATTGATTCTGAAGAAAGCACTTTGATTGTGAAAAAGTCAGATGTGAGAAGTGATCTAATGCCTGCAGCTATGGTCAAGGGAAATGATGAATTTACCAGCCATTTTACATCACCATCCTTTGATGGAAAATCAAGCTTATTGATTGATGAAGCACAGCAGGAAAAGGTTAATAGTCATATGCAGCATATTAGTGGACCAAAGCTCTCTAGCACAAACAAGAAAAGACAAAGAGTTGGCAATAAGTCAAGGCCAAGAGATAGACAGATGATCATGGACAGGATGAAGGAGTTGAGGGAACTTATCCCAGATGGTAGTAGGTGTAGCATTGACAACCTTTTGGAAAGGACCATAAAGCACATGATGTACTTAAGAAAGATAACAAGCCAGGCTGAGAAACTGAAACGATTAGCAGATCGAGAGGTTCCTAAGTGGAAAAAGCAGAAAATCAATGGCAGCCATCCAGGAAGGAGCTGTGCATTTGACTTTGAGAGTGAACTAGCTTTGCCCATAGTCATAGAAGATCTGGAAAGCTCAGGGCACATGCTCATAGAGATGATATGCAATGAGCATGGACTTTTCTTGGAGATTGCTCAGGTGATCAGAAAGCTGGACATTGCCATCTTGAAAGGGGTTTTAGAAAACCGATCAAGCACCAGCTGGGCTTGCTTCATTGTTGAGGTTCCAAGAGGTTTTCACAGGATGGATGTTTTATGTCCTTTACTACATCTACTGCAGCTTAGAAGAAACCATGTTTCATAA 2100 0.3938 MEATSITQLLKGFCDNTQWEYAVFWKLNHHFPMTLAWESGYQKRNEAVESMWDFKSPDEVYSSSSDSSDDSGEYSARLLMVEMSNRKYSLGEGVVGRIALAGDHCWVFCEDILTSKFDTDLIPECPDEWLLQFASGIKTIVLVPVLPQGVLQFGSFEVVAEDLEFVTNVKEKFHYIHCLEANTTPVNLGIDYQDWSFSALSHNLMDSLDESSSITNNLLKGEVSDSTALNVNESRLNQKMLSFQDDYYLSRENQLKYLNRANDNDISCSSIEISIDPRHNGQVETKLNYMEAEIWAWSHLVNSVGVDGDISSGLGPYSGKNMTHQQFGAVEVGHEHDDVKNVNDFSFPSESELHKALGSVAYRQTGKSMSKYISVEETYSSSTLKSNTKEHDQVKCLEFSEEVDPEFLLDAIIGNLCSTSDDTSHISNSVRSLTTMPIKFTGSIQPKIDSEESTLIVKKSDVRSDLMPAAMVKGNDEFTSHFTSPSFDGKSSLLIDEAQQEKVNSHMQHISGPKLSSTNKKRQRVGNKSRPRDRQMIMDRMKELRELIPDGSRCSIDNLLERTIKHMMYLRKITSQAEKLKRLADREVPKWKKQKINGSHPGRSCAFDFESELALPIVIEDLESSGHMLIEMICNEHGLFLEIAQVIRKLDIAILKGVLENRSSTSWACFIVEVPRGFHRMDVLCPLLHLLQLRRNHVS. 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01780 699 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 331 697 IPR043561 GO:0003700|GO:0006355
Seca1g01780 699 MobiDBLite consensus disorder prediction 503 520 - -
Seca1g01780 699 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 173 IPR025610 -
Seca1g01780 699 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 521 570 IPR011598 GO:0046983
Seca1g01780 699 MobiDBLite consensus disorder prediction 503 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01780 Seca-Chr1 32508008 32514493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01780 351 696 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 35.294 1.04e-47 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01780 - - gmx:100820605 978.393