Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01776 ATGAAGATCCAATACCCCTCTCATCTCCTCCTCCTCACAATTACAATAACTATAATCAACTTATTATCTTCCAGTTCCACCCCATTTATCACTGCTCTTAAACACTGTCCGAACTGTGGTCAAACCCAAGTACCATACCCACTAAGCACATCACCAAACTGCGGTGACCAATCCTACAAGATTCGCTGCACTTTAGGCAAACTCTATCTAGACTCCATCAAAGGTTCCTCTTACATGATCACATCCATCAACCCCACATCTCAGCGCTTCATTATCCAACCACCAGGTTTCGCCAACGACACGTGTACGTCCACTGATTTCAAAACCGAAGGAATGTGGCTTGACACCAACTCACCCTTCAACATCACATCAAGCAACACAAGAATTCTCATGAACTGTTCCCAAGACGTCTTCACCACGCTTTGGAACTGCTCCTCAACGAGCATTTGCCATAAGTATATTAAGGACAATGCTGTAGCGGCGAAGGCTTGTGGAGTAAAGAGCAGTGCATCGCAGATATGCTGTGATGTGAAGACTGGTGGGTCTTCTACTGCTCATAGGTTGAGGGTTAGGAAAGAACGTTGTGCTGCGTATGTTAGTTTTCCGAATTTGGATTCTTCTTTGCCTGTTAGTATGTGGCAGCCAGGGGTGGAGATAGAGTGGGTGTTGCCGGAGGAGCCACCGTGTAAGGTGCCTAAGGATTGTTTGGATTTGGTGAATTCTGGTTGTTTGCCGGATCCGGCGGCTGGTGGAGTGAGGAAGTGCTTGTGCAAGTCTGGCTTTCAGTGGGATCCTGTAAACGGAATATGTCAAAATATCAGTAGGTGTCAACATGGAAGAGGTTGCAAGCATGGTGAGAAGAAAGGTCCCCTTATTGGAGGCTTAGCAATGGCAGGGGCAGCCATGCTAACAGGATCCTTGATTACTGCATTGGTCTTTCACCTTCGGAGACAAAGAATCCAAAGAGAAACCCAAGAAAGCATAAGCAGGGCACGCAACATATTAAACACAGACAACAACTATGGCAAATCAGCAAAGATCTTCACCATGAAAGAGATCACAAAAGCAACCAACAACTTCTCCAAAACCAACCTCCTTGGCACTGGTGGCTTTGGTGAGGTTTTCAAAGGAACACTTGATGATGGAACCATCACAGCCATCAAGAGAGCCAAGCTTGGCAACACAACAGGGAATGATCAAATACTCAATGAAGTCAGAATCCTTTGTCAGGTTAACCACAGGAGCCTAGTGAGACTCTTAGGTTGCTGTGTTGAGCTTCCAGTACCACTTCTTATCTATGAATATATCCCAAATGGAACACTCTTTGAGCACTTACATAACACCAACTCTAACAAATGGATCCATCTTGGGTGGCATTCAAGGCTAAGAATTGCACACCAAACTGCTGAAGGGCTTGCTTATCTACACAATGCAGCTATACCAAGAATCTTCCATAGAGATATTAAGTCTAGTAATATTCTCTTGGATGATAACCTTGATGCTAAGGTATCTGATTTTGGGCTTTCAAGGTTGGCTGTGAGTGAAGCAAGTCACATCACAACATGTGCTCAAGGAACATTGGGATATCTTGACCCTGAATATTATGTCAACTTTCAGCTCACTGATAAAAGTGATGTGTATAGTTTTGGGGTGGTTTTGTTGGAGTTGTTGAGTTCTAAAAAGGCTATTGATTTTAATAGAGAAGAGGAGGATGTGAACTTGGTGATTTTAATGAAGAGGGCTTTGAAGGAAGGGAGGTTGATGGATGAAGTTGATCCTATGCTGAAAAATGGAGCTAGTAGACTTGTGTTGGAGAGTATGAAGGCATTTGGGTCTCTTGCTGTGGCTTGTTTAGATGATAGGAGGCAAAATAGGCCTTCAATGAAAGATGTTGCCGATGAGATTGAGTATATTATTGGTATTCTTGCTGATGTTAAGGCTGAGGTTTTAGAGGTTTAG 1959 0.437 MKIQYPSHLLLLTITITIINLLSSSSTPFITALKHCPNCGQTQVPYPLSTSPNCGDQSYKIRCTLGKLYLDSIKGSSYMITSINPTSQRFIIQPPGFANDTCTSTDFKTEGMWLDTNSPFNITSSNTRILMNCSQDVFTTLWNCSSTSICHKYIKDNAVAAKACGVKSSASQICCDVKTGGSSTAHRLRVRKERCAAYVSFPNLDSSLPVSMWQPGVEIEWVLPEEPPCKVPKDCLDLVNSGCLPDPAAGGVRKCLCKSGFQWDPVNGICQNISRCQHGRGCKHGEKKGPLIGGLAMAGAAMLTGSLITALVFHLRRQRIQRETQESISRARNILNTDNNYGKSAKIFTMKEITKATNNFSKTNLLGTGGFGEVFKGTLDDGTITAIKRAKLGNTTGNDQILNEVRILCQVNHRSLVRLLGCCVELPVPLLIYEYIPNGTLFEHLHNTNSNKWIHLGWHSRLRIAHQTAEGLAYLHNAAIPRIFHRDIKSSNILLDDNLDAKVSDFGLSRLAVSEASHITTCAQGTLGYLDPEYYVNFQLTDKSDVYSFGVVLLELLSSKKAIDFNREEEDVNLVILMKRALKEGRLMDEVDPMLKNGASRLVLESMKAFGSLAVACLDDRRQNRPSMKDVADEIEYIIGILADVKAEVLEV. 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01776 652 Pfam Protein kinase domain 361 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01776 652 ProSiteProfiles Protein kinase domain profile. 360 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01776 652 SMART serkin_6 360 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01776 652 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 332 435 - -
Seca1g01776 652 FunFam Wall-associated receptor kinase-like 20 436 648 - -
Seca1g01776 652 SUPERFAMILY Protein kinase-like (PK-like) 342 634 IPR011009 -
Seca1g01776 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Seca1g01776 652 Gene3D Transferase(Phosphotransferase) domain 1 436 644 - -
Seca1g01776 652 Gene3D Phosphorylase Kinase; domain 1 332 435 - -
Seca1g01776 652 ProSitePatterns Protein kinases ATP-binding region signature. 366 388 IPR017441 GO:0005524
Seca1g01776 652 CDD STKc_IRAK 366 636 - -
Seca1g01776 652 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 29 638 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01776 Seca-Chr1 32196995 32202053 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01776 24 648 Receptor kinase-like Gene Family AT5G02070 54.945 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca1g01776 Pkinase 1.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01776 - - gmx:100775709 976.081