Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01774 ATGGACCATCATAAGATTAAAACGTTAGTGTTCACAACAACTGCAGCTCTGTTGCTATCATGCGCCGTGACGGTGCGGCACTGCGGGAACTGCGGTCCGAACCCGGTTCCGTATCCATTAAGCACGGGACCTGACTGTGGTGACCCGTGGTACAAGATCCGGTGCACCGCAGGCACACTGTGGTTCGATGCACTTGCCGGATCATCCTATATGATTAGGTCCATTGATCCGGTAACCCGTCGGATTATAATCCGACCCGCTAGCTTTTCAGTAAGCGCGTGCGTGTCCACGGATTTCCGCAGCGAAGGCATGCACCTGAACGAGACTCTTCCTTTTAGTGTGGCCGCGGGAAACACCATCTTTCTGTTCAACTGCACCGCCAACGCACCTCACGCGCCGCCGTTGGACTGTTCGGCAACCAGTTTGTGCCACAGCTACATCAGGGACCACAAGGATGCCCGCGCGTGCGAGCGAGTGGGACAGTGCTGCGCGTACAAAACCGGAGGGGCGCGCAAAGAGTATGTGGTTCGGGTTCACGGCGGAGGTTGCGCAGCGTATCAGAGTTTTGTGGATTTGGATGGTGCGGTTGCGACGCCGGGAAAGCGGTGGCCGGAGCCTGGAGCGGGGATAGAGTGGGTGGTACCACAGGAACCGGTTTGTAAGGTGCCAATGGATTGTAAAGAATTGTTAAACTCAAACTGTGGAGTGGGCCCGGGTGGAGGTGGGCTGCAGAGGTGCTTATGCAATGCTGGTTTTAAGTGGGATCCTAGCGATGGATTGTGTCAACCACAAACTCGTAAGCCCATAGGTAAGGTTTTTGGCCATTGCTTTTCCCACTCTTTGTTGTTTTCAGCTGTGGTTGTTTCCTTAGGAGGAATAGTCTCTGTTGTAACAATAATTGGAGTCATTCTCTACAAGAAGCATAATCAAGTGGAGAGAAAAGAAAAGAAAACCATAACCAAAAAGGGAAAAGATATCTCAAGTGCTAAAGCTAGTGCTTTATCATCTAGGATCTTCACAGGCAGAGAGATAAAGAAAGCAACCAACAATTTCTCCCAAGAAAAGCTAATTGGCTCTGGTGGTTTTGGTGAAGTGTTCAAGGGAACTTTTGATGATGGAACAGTCACTGCCATCAAGCGTGCCAAGCTGGGAAACACCAAAGGCATTGATCAAATACAGAATGAAGTTCGAATTCTCTGCCAAGTAAATCATAGGAGCCTAGTGAGACTACTTGGTTGTTGCTTGGAACTTGAGCACCCTTTACTAATATATGAATATGTTTCCAATGGGTCACTTTTTGATTACCTCCATCGCCACCCTTTTGGCACAAGGGCACCCCTTAATTGGCATCACAGACTCAAAATTGCACATCAAACAGCTGAAGGGCTTTCCTATCTGCATTCTGCAGCTGTGCCTCCCATTTACCACCGTGATGTGAAATCAAGCAATATATTACTTGATGACAAGCTTGATGCTAAAGTTTCTGACTTTGGATTATCTAGGCTTGTGGAAATAGCTGAACAAAACAAGAGCCATATTTTCACTAGTGCACAGGGGACACTTGGTTATCTTGACCCTGAATACTACAGGAACTTTCAATTGACAGATAAGAGTGATGTTTATAGCTTTGGGGTGGTGTTAATGGAGCTTCTCACTGCTCAGAAAGCTATTGATTTCAACAGGGAAGAAGAGGATGTGAACTTGGCAGTGTATGCAAGGAAGAAAATGATTGAAGACAGGTTGATAGATGTTGTTGATCCATTGCTTAAAGAGGGAGCTAGTGATTTAGAATTGGAAACTATGAAATCATTGGGTTATCTTGCAGCTTCATGTTTGGATGAGCAGAGGCAAAAACGGCCTTCAATGAAAGAGGTTTCAGATGAGATTGAATACCTGATTAAAATTGTTAAAGGTCAGGTTTCTAAACCATAA 1932 0.4658 MDHHKIKTLVFTTTAALLLSCAVTVRHCGNCGPNPVPYPLSTGPDCGDPWYKIRCTAGTLWFDALAGSSYMIRSIDPVTRRIIIRPASFSVSACVSTDFRSEGMHLNETLPFSVAAGNTIFLFNCTANAPHAPPLDCSATSLCHSYIRDHKDARACERVGQCCAYKTGGARKEYVVRVHGGGCAAYQSFVDLDGAVATPGKRWPEPGAGIEWVVPQEPVCKVPMDCKELLNSNCGVGPGGGGLQRCLCNAGFKWDPSDGLCQPQTRKPIGKVFGHCFSHSLLFSAVVVSLGGIVSVVTIIGVILYKKHNQVERKEKKTITKKGKDISSAKASALSSRIFTGREIKKATNNFSQEKLIGSGGFGEVFKGTFDDGTVTAIKRAKLGNTKGIDQIQNEVRILCQVNHRSLVRLLGCCLELEHPLLIYEYVSNGSLFDYLHRHPFGTRAPLNWHHRLKIAHQTAEGLSYLHSAAVPPIYHRDVKSSNILLDDKLDAKVSDFGLSRLVEIAEQNKSHIFTSAQGTLGYLDPEYYRNFQLTDKSDVYSFGVVLMELLTAQKAIDFNREEEDVNLAVYARKKMIEDRLIDVVDPLLKEGASDLELETMKSLGYLAASCLDEQRQKRPSMKEVSDEIEYLIKIVKGQVSKP. 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01774 643 Gene3D Phosphorylase Kinase; domain 1 308 426 - -
Seca1g01774 643 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Seca1g01774 643 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Seca1g01774 643 FunFam Wall-associated receptor kinase-like 20 427 642 - -
Seca1g01774 643 CDD STKc_IRAK 357 630 - -
Seca1g01774 643 Gene3D Transferase(Phosphotransferase) domain 1 427 640 - -
Seca1g01774 643 ProSiteProfiles Protein kinase domain profile. 351 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01774 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Seca1g01774 643 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 27 632 IPR045274 GO:0007166
Seca1g01774 643 SMART serkin_6 351 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01774 643 Pfam Protein kinase domain 352 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01774 643 SUPERFAMILY Protein kinase-like (PK-like) 327 627 IPR011009 -
Seca1g01774 643 FunFam Wall-associated receptor kinase-like 20 313 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01774 Seca-Chr1 32106099 32109906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01774 28 642 Receptor kinase-like Gene Family AT5G02070 56.180 0.0 708
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca1g01774 Pkinase 9.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01774 - - aprc:113862410 1026.93