Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01768 ATGGGTGATGATAACGTTGATTTAACTACACCAACCAAAGGCTTAAATGATCCAGTTGATACGTTGGAGGAATGGGTTCCAAAGTGTGATGAAGAAATCAAACATGTAGTTGGTAGAGTCTTTGATACTTTAGAACAAGGAGGGGACTTTTATCAAAGGAATGCACATACTGTTGGTTTTAGTGTACGCAAAGCAACTGAAACAAAAGATAAAAATGGAGAAACAAAGTGGAAATATTTTCTTTACTCTAAAGAAGGCTTCAAATTTGAAACAAAAGAGGGTGTAACTGAGTTGCTTGTTGATGATAAAAAATTGCCTAAAACCAGACGAAGAAAACTAACAAGGGAAGGGTGTAATGCAAGGATTGTTTTTAAGAAGACACAAGAAGGAAAATATGAAGTGGTGCGATTTCATGAAGGTCATACATATGCATTAGCTACACCTAAAAAGAAGCAGTTCTTAATATCTGCAAGAAGTATAAATAATCTTCATAAGAATTTATTACATTGTTATAATAGAGCTAATGTAGGCCCTTCAAAAGTGTATCAATTATTGAAAGAGCAGGTTGAGAGTTATGATAGTATAGGATGCACAAAGAGAGATCTCCAAAATTATTCTAGAGACTTGAAAGACTTAATCAAAGATTCTGATGCACATATGTTTCTTGATAATTTTAGGAGAAAACATGAGATGAACCACTCTTTTTACTATGACTATGAGAGCATAACTTTTGGGGCTGCCTTCCTAGCAGATGAGAAAGTTGAATCATTTGAGTGGTTGTTTGAAATATTTTTGAAAGCAATGGGAGGGCATAAACCTATTGTGATTATAACAGACCAGAACCCAGCCATGAAAATTGCAATTGAGAAGGTTTTCACAGGTTCTTCTCATAGATTTTGCATGTGGTACATATTGAAAAAACTTTTAGAGAAGGTGGGTGTTTCCTTGAATTCCAATGCTGGTTTTAACAGTCGTTTTAAGACCCGTGTTTGGAATTCAGAGTCTCCAGATGAATTTGAATTGACATGGAAAGCTATCATTATTGATTTCAAGTTAGAAGAAAATGGTTGGCTTTCACAAATATCCGAGAGTGAAAATTCCTTCTTTGGTAATTACTTGAATAAGAACCTTAGTTTGGTGGAGTTTTGGATGAGATTTGATTCTGCACTAGAAGCACAGAGTCATAATGAATTACTTGCAGATAATGATACACTTCATTCTATGCCCGAATTGAAGTTGCATAAGGATAAAGAGAAGCATGGCAGAGAAGTTTACACTCGTCAAAATTTTTACATATTTCAAGGTGAGTTATGGAGTGCATGTGTGGATTGTGGGGTTGAAGAAACAAAAGAGGATTATGGGCAATTATTAATTTTTATACTTGAGCAGCTTGTGGTTAATGGAAACAAAGTGAGCAAACATCGGAAAGTTGTTTATAATCCTTCCAATCATATTGCACATTGTTCATGTAAAATGTTTGAATCTGAAGGCATGCCATGTCGACATATCCTTTTTGTATTAAAGGGTAAAGGCTTGAGTGAAATCCCAAGTTATTACATTATTAATAGATGGACCAAATTAGCAACTGGTACTCCAATTTTTGATTATGATGGCAATATATTGGAGGCATGTTCCAAATTGGAAAGTGAAAGCAAGTTAATTTCTGATGCATGGGCAAAATTGTTTAAATGCATGCATTTGATTGGTACATGTAAAGATAAACTACTCCTTGTCATAAATAAAGATAAACTATATCATGAGTTTGGTGATAGTCATCAGCTTTAA 1785 0.3434 MGDDNVDLTTPTKGLNDPVDTLEEWVPKCDEEIKHVVGRVFDTLEQGGDFYQRNAHTVGFSVRKATETKDKNGETKWKYFLYSKEGFKFETKEGVTELLVDDKKLPKTRRRKLTREGCNARIVFKKTQEGKYEVVRFHEGHTYALATPKKKQFLISARSINNLHKNLLHCYNRANVGPSKVYQLLKEQVESYDSIGCTKRDLQNYSRDLKDLIKDSDAHMFLDNFRRKHEMNHSFYYDYESITFGAAFLADEKVESFEWLFEIFLKAMGGHKPIVIITDQNPAMKIAIEKVFTGSSHRFCMWYILKKLLEKVGVSLNSNAGFNSRFKTRVWNSESPDEFELTWKAIIIDFKLEENGWLSQISESENSFFGNYLNKNLSLVEFWMRFDSALEAQSHNELLADNDTLHSMPELKLHKDKEKHGREVYTRQNFYIFQGELWSACVDCGVEETKEDYGQLLIFILEQLVVNGNKVSKHRKVVYNPSNHIAHCSCKMFESEGMPCRHILFVLKGKGLSEIPSYYIINRWTKLATGTPIFDYDGNILEACSKLESESKLISDAWAKLFKCMHLIGTCKDKLLLVINKDKLYHEFGDSHQL. 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01768 594 SMART 26again6 486 513 IPR006564 GO:0008270
Seca1g01768 594 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 33 558 IPR031052 GO:0006355
Seca1g01768 594 Pfam MULE transposase domain 241 307 IPR018289 -
Seca1g01768 594 Pfam SWIM zinc finger 486 507 IPR007527 GO:0008270
Seca1g01768 594 ProSiteProfiles Zinc finger SWIM-type profile. 475 511 IPR007527 GO:0008270
Seca1g01768 594 Pfam FAR1 DNA-binding domain 49 145 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01768 Seca-Chr1 31999497 32001519 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g01768 FAR1 4.4e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01768 - - mtr:112420857 616.69