Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01738 ATGTGGTATCCTGACCACAACAGATTAAATATGAAATTATATTCAGTCATAGCTCTCCAAGATCTATACAAGACCTTAAACTCCCCACCAGTACTCCAAGGATGGAACGGTGGTGATCCTTGTGAGGAGTCTTGGACAGGAGTAGCATGTTCTGGGTCATCAGTTATACAACTCAAAATTCAAGGATTGAACCTCACAGGAGATCTTGGAGGCTTGCTCTATAATCTACAGAATTTGAAGCAACTTGATGTCAGTTTGAACAACATAGTGGGTGAAATACGATACGGTTTACCCCCCAATGCCACACATATAAATATGGCTTGCAACTACTTGAGCCAAAATATCCCCCATTCATTATCAACCATGAAAAAACTAAGACATCTGAACTTAAGCCACAATCTTCTATATGGACCCATTGGCAATGTGTTTACTGGCTTAGATAATCTCAAAGAAATGTATGTCTTCTTCACCTCAGTCTTTTGCTATTGCATTTGA 495 0.3939 MWYPDHNRLNMKLYSVIALQDLYKTLNSPPVLQGWNGGDPCEESWTGVACSGSSVIQLKIQGLNLTGDLGGLLYNLQNLKQLDVSLNNIVGEIRYGLPPNATHINMACNYLSQNIPHSLSTMKKLRHLNLSHNLLYGPIGNVFTGLDNLKEMYVFFTSVFCYCI. 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01738 164 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 152 IPR046959 -
Seca1g01738 164 Pfam Leucine rich repeat N-terminal domain 18 51 IPR013210 -
Seca1g01738 164 Pfam Leucine rich repeat 100 154 IPR001611 GO:0005515
Seca1g01738 164 Gene3D Ribonuclease Inhibitor 16 160 IPR032675 -
Seca1g01738 164 SUPERFAMILY L domain-like 27 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01738 Seca-Chr1 30658700 30659842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01738 16 156 Strubbelig Receptor Gene Family AT5G06820 60.140 4.81e-50 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01738 - - tpra:123896060 234.572